Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00389
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21300.1 68415.m02535 kinesin motor family protein contains P...    31   0.28 
At4g15840.1 68417.m02409 expressed protein                             29   0.85 
At5g07790.1 68418.m00892 expressed protein                             27   4.5  
At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to ribo...    27   6.0  

>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 12  LEETQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 125
           LE+  K+ EH ASS       R   N W  GSV  ISG
Sbjct: 420 LEDFMKMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 117 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 209
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 48  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 191
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to
           ribonuclease 2 precursor SP:P42814, GI:289210; contains
           a ribonuclease T2 family histidine active site signature
           (PDOC00459)
          Length = 259

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 207 GRQHCVTVDCCCHGSPTP 260
           G +HC + + CC GS  P
Sbjct: 48  GTRHCCSKNACCRGSDAP 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,290,493
Number of Sequences: 28952
Number of extensions: 156873
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)