Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00388
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   138   4e-34
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   1.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.1  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   3.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   4.1  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  138 bits (335), Expect = 4e-34
 Identities = 66/83 (79%), Positives = 73/83 (87%)
 Frame = +3

Query: 240 QKDPPIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 419
           QK   I+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARY
Sbjct: 69  QKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARY 128

Query: 420 YKTKSVLPPNWKYESSTASALVA 488
           Y+    LPP WKYES+TASALVA
Sbjct: 129 YRKVGALPPTWKYESATASALVA 151



 Score =  110 bits (265), Expect = 1e-25
 Identities = 50/73 (68%), Positives = 58/73 (79%)
 Frame = +1

Query: 37  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 216
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 217 AQVRFVTGKKILR 255
            QVRF+TG+KI+R
Sbjct: 61  PQVRFITGQKIMR 73


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 333 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 300 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 452
           YYL KKA  + +    N  +K+SK   I +E +  +       +  L  +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -3

Query: 168 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 13
           TL+SK    FL+    Q Q      AV QR   D L  SV +  V   +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
 Frame = +3

Query: 69  LPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 248
           +P G   PP  P ++    R+      Q W+    S++NW N +G+T     ++    + 
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYTIPLDKRLAADGRG 278

Query: 249 PPIMKAMGLAPDLPEDLYYLIK--------KAVAMRKHLERNRKDKDSKFRLILVESRIH 404
              ++         E LY + +        +A+  +K  E+ +++K+ +  ++  ++R  
Sbjct: 279 LNDVEINDGFAKFSEALYTVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKARED 338

Query: 405 RLARYYKTKSVLPPNWKYESSTASA 479
           R+ R     S  P + K  S++ S+
Sbjct: 339 RMGR--NAASSGPSHAKPRSTSVSS 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,183
Number of Sequences: 5004
Number of extensions: 38438
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)