Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00388
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 122 1e-28
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 122 1e-28
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 109 2e-24
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 107 6e-24
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 1.3
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 29 2.4
08_01_0010 + 80052-81419 28 5.4
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 7.2
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 27 7.2
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 7.2
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.5
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 122 bits (295), Expect = 1e-28
Identities = 56/67 (83%), Positives = 61/67 (91%)
Frame = +3
Query: 255 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK
Sbjct: 113 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 172
Query: 435 VLPPNWK 455
LPP WK
Sbjct: 173 KLPPTWK 179
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/82 (51%), Positives = 49/82 (59%), Gaps = 17/82 (20%)
Frame = +1
Query: 61 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 189
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 190 VMLRDSHGVAQVRFVTGKKILR 255
V+LRD HG+ V+ VTG KILR
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILR 112
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 122 bits (295), Expect = 1e-28
Identities = 56/67 (83%), Positives = 61/67 (91%)
Frame = +3
Query: 255 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK
Sbjct: 74 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 133
Query: 435 VLPPNWK 455
LPP WK
Sbjct: 134 KLPPTWK 140
Score = 101 bits (242), Expect = 4e-22
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1
Query: 37 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 216
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 217 AQVRFVTGKKILR 255
V+ VTG KILR
Sbjct: 61 PLVKSVTGSKILR 73
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 109 bits (261), Expect = 2e-24
Identities = 48/67 (71%), Positives = 59/67 (88%)
Frame = +3
Query: 255 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY+
Sbjct: 74 VLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAK 133
Query: 435 VLPPNWK 455
+P +K
Sbjct: 134 KIPAFFK 140
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +1
Query: 37 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 216
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 217 AQVRFVTGKKILR 255
+ VTG KILR
Sbjct: 61 PLAQGVTGGKILR 73
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 107 bits (257), Expect = 6e-24
Identities = 51/64 (79%), Positives = 55/64 (85%)
Frame = +3
Query: 255 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK
Sbjct: 131 ILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTK 190
Query: 435 VLPP 446
LPP
Sbjct: 191 KLPP 194
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKIL 252
+V+E I K K G SQIGV+LR HG+ V+ + KIL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKIL 129
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 73 GRYPYQERAYDPCLRLFT 20
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 120 DCRRC--KGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPIMKAMGLAPDLPE 293
+C C + + G CNA G W+ +R K PP+ + + P
Sbjct: 235 ECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPV--PLQIVPAATN 292
Query: 294 DLYYLIKKAVAMRKH 338
D+ I +A + +H
Sbjct: 293 DVQNGIVEATGVEQH 307
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 138 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 46
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 91 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 204
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 109 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRS*RQW 270
W LT + +YK + G+ + L+++ ++RFV KK+ + R++
Sbjct: 286 WEHLTNQQAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRF 339
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PPIMKAMGLAPDLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYK 425
PP + L P LPE L I + A+ +KHL +K K K +ES+ + +++
Sbjct: 65 PPTQHNVNL-PQLPECLQVSIYRFAMLPKKHLSGAKKRKKRKRGDQFIESQKGAIHKFFS 123
Query: 426 TKSVLPPNWKYESSTAS 476
S P+ E+ S
Sbjct: 124 ASSSAVPDENPEADYPS 140
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 282 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 380
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,874
Number of Sequences: 37544
Number of extensions: 262675
Number of successful extensions: 718
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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