Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00388
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21) 127 6e-30
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11) 29 3.2
SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_17582| Best HMM Match : Fukutin-related (HMM E-Value=5.9e-13) 28 5.5
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 28 5.5
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.6
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3) 27 9.6
>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
Length = 135
Score = 127 bits (306), Expect = 6e-30
Identities = 58/67 (86%), Positives = 63/67 (94%)
Frame = +3
Query: 255 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 434
I+KA GLAP LPEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK
Sbjct: 69 ILKAKGLAPSLPEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKR 128
Query: 435 VLPPNWK 455
VLPPNWK
Sbjct: 129 VLPPNWK 135
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/49 (81%), Positives = 46/49 (93%)
Frame = +1
Query: 109 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 255
W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILR
Sbjct: 20 WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILR 68
>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 168 SHSLTNWCNAEGFTWSCPSKIRNWQKDPPIMKAMGLAPD-LPEDLYYLIKKAVAMRKHLE 344
SHS+ C T SCP+ + N ++K +P P L++L K + L
Sbjct: 275 SHSMLRPCFGSEMTVSCPALVTNVASSVRLVKWRSYSPSGTPRLLFHLQKGPGIQKWFLR 334
Query: 345 RNRKDKDSKFRL 380
+ ++S+ RL
Sbjct: 335 AHNGSQNSRVRL 346
>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
Length = 733
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 260 HDRRIFLPVTNLTWATPCESLSITPI 183
H RRI LP+TN + T E+L +T +
Sbjct: 682 HVRRIILPLTNRIYLTGSEALKVTQL 707
>SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +3
Query: 219 PSKIRNWQKDPPIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESR 398
P + N Q P A+ + P D +Y ++ + R + N + D K + + R
Sbjct: 57 PRRDSNPQSSDPKSDALSIRP---RDYHYGVQNEIVRRPRRDSNPQSSDPKSNALSITPR 113
Query: 399 IHRL 410
+H L
Sbjct: 114 VHLL 117
>SB_17582| Best HMM Match : Fukutin-related (HMM E-Value=5.9e-13)
Length = 411
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 201 GFTWSCPSKIRNWQKDPPIMKAMGL 275
GF W P K W K PP ++ G+
Sbjct: 373 GFDWDTPVKEWTWNKSPPNVRPNGV 397
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 201 GFTWSCPSKIRNWQKDPPIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 371
GF P ++ Q+D GLA P L+Y + +RK L R KD+ K
Sbjct: 2 GFLCFPPRRVATPQEDRICSNPQGLAIRPPSVLWYTERSKDEVRKRLLRVAKDRPRK 58
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 151 KLGKKGLTPSQIGVMLRD 204
KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 153 TWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPIMKAMGLAPDLP---EDLYYLIKK 317
T E SH ++ CN G+ S P + ++ + P+ + PDL E L L+KK
Sbjct: 606 TLNEKSHEVSRACNLGGWGRSRPGENQSNPRFSPVNQLAKFIPDLATINEPLRQLLKK 663
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 279 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 422
PD+P+D YYL + +++M L KD K +L++ L Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195
>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
Length = 284
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 431
+A G+APD P +L LIK+ + + + + R+ K+ + + R+ + R +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,128,030
Number of Sequences: 59808
Number of extensions: 302848
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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