Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00386
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   129   4e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   126   5e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.24 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   3.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.8  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   6.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    26   6.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  129 bits (312), Expect = 4e-31
 Identities = 63/84 (75%), Positives = 68/84 (80%)
 Frame = +1

Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
           P DV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133

Query: 430 HQPITEASYVNIPVIALCNTDSPL 501
            Q I EAS+VNIPVIALC+TDS L
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSIL 157



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 36/65 (55%), Positives = 51/65 (78%)
 Frame = +2

Query: 59  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 238
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 239 AIENP 253
            IENP
Sbjct: 70  TIENP 74



 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 7/80 (8%)
 Frame = +3

Query: 510 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ- 686
           D+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q 
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQK 220

Query: 687 ------AKEQAVVPAKTRSS 728
                 A+E+A + A+T ++
Sbjct: 221 AAAAAAAEEEAQLAAQTAAA 240


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  126 bits (303), Expect = 5e-30
 Identities = 62/99 (62%), Positives = 74/99 (74%)
 Frame = +1

Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
           P DV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132

Query: 430 HQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPSLPT 546
            Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 133 AQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 42/69 (60%), Positives = 52/69 (75%)
 Frame = +3

Query: 510 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 689
           DIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E+ E++A
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVER-EEEA 218

Query: 690 KEQAVVPAK 716
           K+ A   A+
Sbjct: 219 KKAAAAAAE 227



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 35/69 (50%), Positives = 53/69 (76%)
 Frame = +2

Query: 47  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 226
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 227 RAVVAIENP 253
           R +  IENP
Sbjct: 65  RVIATIENP 73


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 394 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGT 513
           P L+++L+P ++     EA   ++P I + +TD+  R  T
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 657 PEESEKD--EQQAKEQAVVPAKTRSSCSCP 740
           P++ + D   Q   E  +VPAK R+  SCP
Sbjct: 473 PQKGKHDTSSQMPSENEIVPAKERAYLSCP 502


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 549 IGLMWWLLAREVLRLRGVLPRDQRWD 626
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 604 FPVTSAGML--WLICSSTVTLKKVKRM 678
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 444 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 277
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 621 WDVVVDLFFYRDPEESEKDEQQAKEQAVVPAKTRSSCSC 737
           W++  D     D E SEK  Q+    ++ PA+     SC
Sbjct: 727 WEIQQDFSIENDTELSEKVGQRTVLDSIAPAELNIEDSC 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,402
Number of Sequences: 5004
Number of extensions: 75283
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)