Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00386
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 158 4e-39
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.4
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 29 3.1
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.1
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 5.5
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 5.5
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 7.2
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.5
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 158 bits (384), Expect = 4e-39
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P DV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP D
Sbjct: 71 PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130
Query: 430 HQPITEASYVNIPVIALCNTDSPLR 504
HQP+TEASYVNIPVIA CNTDSPLR
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLR 155
Score = 109 bits (262), Expect = 2e-24
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +2
Query: 41 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 220
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 221 AARAVVAIENP 253
AAR +V IENP
Sbjct: 61 AARIIVTIENP 71
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 674
P + D+AIPCN K HSIGLM+WLLAREVLR+RG + R W+++ DL+FYRDPEE+EK
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEK 212
Query: 675 DEQQA 689
+EQ A
Sbjct: 213 EEQAA 217
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 412 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 322
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 543 HSIGLMWWLLAREVLRLRGVLP 608
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 640 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMS 509
K+TT RWS+G TP ++ H I L+ HG S
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPS 1437
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 645 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 526
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 328
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 447 SFICQHSCDCFVQHRLPTKIWDIAIPC 527
S +C C F+ HR K+W +PC
Sbjct: 2290 SAVCGQYCLFFLWHRTRNKLWKTLLPC 2316
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 328
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1275
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 206 EKLVLAARAVVAIENPVMCSSSHHGPSVSVL 298
+K+ LA RA VAI+ + C + +HG V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 653 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNV 510
+V Q+ + P +T HT+ T P HQ + +GR G DSNV
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNV 289
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 206 EKLVLAARAVVAIENPVMCSSSHHGPSVSVL 298
+K+ LA RA VAI+ + C + +HG V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 271 SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 438
S + GQ ++K++ G +A F + T ++ A F +L + AQDH
Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236
Query: 439 ITEASYVNIPVIAL-CNTDSPL 501
I +S VN+ V L N ++PL
Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPL 1258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,756,506
Number of Sequences: 59808
Number of extensions: 623591
Number of successful extensions: 1803
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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