Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00386
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   128   3e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   123   1e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   123   1e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    33   0.16 
At2g22340.1 68415.m02651 hypothetical protein                          33   0.28 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.0  
At4g16670.1 68417.m02518 expressed protein                             28   7.9  
At3g58050.1 68416.m06471 expressed protein                             28   7.9  
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    28   7.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  128 bits (310), Expect = 3e-30
 Identities = 57/86 (66%), Positives = 69/86 (80%)
 Frame = +1

Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
           P+D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
           HQPI E +  NIP+IA C+TDSP+RF
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRF 160



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +3

Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE- 671
           P +  DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ 
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216

Query: 672 KDEQQAKEQA 701
           +DE +A  QA
Sbjct: 217 EDEDEAGPQA 226



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +2

Query: 62  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 241
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 242 IENP 253
           IENP
Sbjct: 72  IENP 75


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  123 bits (297), Expect = 1e-28
 Identities = 55/86 (63%), Positives = 66/86 (76%)
 Frame = +1

Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
           P+D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
           HQPI E +  NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 74  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 253
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/70 (52%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +3

Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 674
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE+++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQ 217

Query: 675 D-EQQAKEQA 701
           + +++A+ QA
Sbjct: 218 EGDEEAEVQA 227


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  123 bits (297), Expect = 1e-28
 Identities = 55/86 (63%), Positives = 66/86 (76%)
 Frame = +1

Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
           P+D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
           HQPI E +  NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 74  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 253
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +3

Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 638
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 394 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPS 537
           P  ++V D  +    I EAS + IPV+A+ + + PL F   +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 112 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 231
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 349 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 450
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g16670.1 68417.m02518 expressed protein 
          Length = 429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 651 RDPEESEKDEQQAKEQAVVPAKTRSSCSCP 740
           R+ EE E+D++++   + VP    S CS P
Sbjct: 18  REEEEIEEDDEESMTLSSVPENETSECSSP 47


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = +1

Query: 658 LKKVKRMNNKPRNRLWY-----QLKPEV-VAPVHEDWNETLSQ 768
           LK++KRM  +PR   W+       + EV +  V  DW ET S+
Sbjct: 291 LKELKRMRREPRCTTWFCVANTTFQYEVSIDSVKADWRETFSE 333


>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/86 (24%), Positives = 43/86 (50%)
 Frame = +2

Query: 32  SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 211
           S+++S  +++LA ++  +  ++A T  L  E    ++ +  ++    GT  +  +   E 
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702

Query: 212 LVLAARAVVAIENPVMCSSSHHGPSV 289
           L+  AR    + + + CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,059
Number of Sequences: 28952
Number of extensions: 420845
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)