Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00384
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.50 
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    28   1.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   6.2  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   8.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 398 SRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATIQSSSQT 526
           S  N  T AT TSS ++S A SNS +T   L SS+   ++S T
Sbjct: 198 SSLNSTTSATATSSSLSSTAASNS-ATSSSLASSSLNSTTSAT 239


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = +1

Query: 187 PQT*RPRRNSAQKWSLPTQGQSTSLVQLGYGRRL------HQRGEDCAHLDDNQGSGVCR 348
           P+  +P+     ++SL    +   L+++G  + L       + GE C H  D +   VC 
Sbjct: 263 PEVLKPKNPDIGRFSLKLDSEYDVLLEIGRSKHLGYCSSRRKSGELCKHWLDKRAGDVCE 322

Query: 349 DVVSRLVSQGIKNAMSFA 402
             V   V + +     FA
Sbjct: 323 YHVDLAVQRSMSTRTEFA 340


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  LPSARGRSVSGALQTSPGLSTPPKDSSLHTDILKI 115
           L S+   S+  +  TSP L    KD+S  +DILK+
Sbjct: 220 LNSSDSASIYSSPYTSPTLEFSKKDASARSDILKM 254


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 630 NNVIFKILNTEHEMYLKLDVNVDRY 704
           N+V+F+ L  E++ Y  +  N DR+
Sbjct: 207 NSVVFQYLKDENKFYFGVSANQDRF 231


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 226 WSLPTQGQSTSLVQLGYGRRLHQRGEDC 309
           WSLP    S S+ ++  G  + Q  EDC
Sbjct: 366 WSLPANQTSDSISKILTGSTIFQGHEDC 393


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 103 YSENSDDIQNLERELVKRAYTMEPGTNCPQT*RP 204
           +++  +DIQ+ E +L+   YT+ P T      RP
Sbjct: 424 FNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRP 457


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 8   LLPSARGRSVSGALQTSPGLSTPPKDSSLHTDILKILTTFKISSVSW*KGLILWSRVRTA 187
           L+  A G ++S  L T   L+    D+S  ++  K L   K++ V       ++      
Sbjct: 401 LINQAIGDAISDLLATISVLNALHWDASAWSNTYKDLPN-KLAKVKV-SDRTIYKSTDAE 458

Query: 188 RRLEDPDGIQHK 223
           RRL  PDG+Q K
Sbjct: 459 RRLVSPDGLQEK 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,778
Number of Sequences: 5004
Number of extensions: 57440
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)