Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00384
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64...    30   1.6  
07_03_0505 + 18858406-18858522,18859860-18859955,18860760-18861047     29   3.7  
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60...    29   4.9  
11_06_0577 - 25158833-25162864                                         28   6.4  
01_01_0888 + 6990354-6991862,6991970-6992431                           28   6.4  
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    28   8.5  
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045...    28   8.5  
03_06_0754 - 36025579-36027000                                         28   8.5  

>06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-648352,
            649088-649798,649944-650674,650942-651017,651096-651182,
            651429-651517,651917-651973,652402-652510,652590-652649,
            652835-652919,653178-653242,653694-653753,653869-653913,
            654697-654800,654877-655099
          Length = 1156

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 102  SVCND--ESFGGVDNPGDVCSAPL 37
            S+CND  + F  +D PGD+ S+PL
Sbjct: 1111 SICNDLVQGFAAIDLPGDIFSSPL 1134


>07_03_0505 + 18858406-18858522,18859860-18859955,18860760-18861047
          Length = 166

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -2

Query: 204 GSSSLRAVRTRLHSISPFY--QLTLEILNVVRIFRISVCNDESFGGVDNPGD 55
           GS  +++   R HSI+P +  +LTL I N++   +I V + ++F   D+ GD
Sbjct: 37  GSQKVKS-SIRYHSINPEWNEELTLSITNMMLPVKIEVFDKDTFTKDDSMGD 87


>05_01_0090 +
           598311-599597,599884-599997,600186-600450,600994-601109
          Length = 593

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 271 GYGRRLHQRGEDCAHLDDNQGSGVCRDVVSRLVSQGIKNAMSFA 402
           G GR  H  G+D    DD+  +G C   +  ++S   ++A +FA
Sbjct: 21  GRGRGHHAAGDDAVAFDDDDAAGGCNS-IGHILSFDGRDAPAFA 63


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 554 PPNLGRWKRLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRERGQI 703
           PP  G W  L  +P+ L+T  +  +  + + + + R RDV E  +  G +
Sbjct: 86  PPEPGFWPWLRHVPTWLSTVPTRHRLAKKIHELKDRVRDVGERRQRYGVV 135


>01_01_0888 + 6990354-6991862,6991970-6992431
          Length = 656

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 587 QLPSQLATHLSLGKQQRHLQDTEHRTRD 670
           +L  Q+ THL  G+QQ+  Q  E R +D
Sbjct: 131 KLEKQITTHLRGGRQQQQQQQPEQRRQD 158


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 641 LQDTEHRTRDVLETGRERGQIWRQED 718
           L+D++ R RD+ E    R QIW Q++
Sbjct: 539 LEDSKTRVRDLEELLESRSQIWEQKE 564


>05_06_0104 -
           25603568-25603867,25603965-25604162,25604247-25604526,
           25604615-25605419,25605518-25606673
          Length = 912

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  PSARGRSVSGALQTSPGLSTPPKDSSLHTDILKIL 118
           P +  R VSGAL+  P  S PP      T ++K++
Sbjct: 61  PDSFERVVSGALKKLPSQSPPPDSVPASTALIKVI 95


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 578 RLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRER 694
           R H++  Q+A   +L      L D EH  R +L+T   R
Sbjct: 145 RAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQTSSSR 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,270
Number of Sequences: 37544
Number of extensions: 392867
Number of successful extensions: 1336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)