Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00384
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48717-4|CAA88607.1|  515|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z48717-4|CAA88607.1|  515|Caenorhabditis elegans Hypothetical
           protein T10B9.7 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 569 RWKRLHQLPSQLATHLSLGKQQRHLQDT 652
           RWKRL  + SQ  ++ SL K +R ++D+
Sbjct: 126 RWKRLRTISSQSFSNASLKKMKRTVEDS 153


>U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical
           protein C24A3.1 protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/93 (27%), Positives = 40/93 (43%)
 Frame = +2

Query: 413 GTRATRTSSKITSRANSNSYSTKRELNSSATIQSSSQTGC*R*PVQRPPNLGRWKRLHQL 592
           G +A +    +T +  S+SY T      +  +   +QT       +RPP  G    L +L
Sbjct: 45  GPKAPKEGHAVTPKTRSSSYETPVV---TRRVYRKAQTP------ERPPRTGDDAALSRL 95

Query: 593 PSQLATHLSLGKQQRHLQDTEHRTRDVLETGRE 691
            SQLA    + +Q R L   E   R  LE  ++
Sbjct: 96  QSQLA---QMQQQNRDLATAEKAARKRLEQNQD 125


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 106  SENSDDIQNLERELVKRAYTMEPGTNCPQT*RPRRNSAQKWSLPTQGQST 255
            +   DD+ + + EL KRA      TN P+T +    S  K +  T+  +T
Sbjct: 2267 ASKKDDVTSEKNELEKRASDAAAATNAPETNKDMDTSTPKPAPVTRSPAT 2316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,837
Number of Sequences: 27780
Number of extensions: 327268
Number of successful extensions: 1240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)