Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00384
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 534 NVDRYKDRLTWGDGKDYTSYRVSWRLISLWENNNVIFKILNTE 662
           N + +KD+  W D  + + +    ++    + N + FKI  TE
Sbjct: 489 NTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEIDFKIEVTE 531


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 473 SMSWNSLGK*SSTMSLWPSCHNLY 402
           ++S NSLG  S +     SCH+ Y
Sbjct: 211 AISSNSLGSRSRSFQRTSSCHSRY 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 626  KQQRHLQDTEHRTRDVLETGRERGQIWRQED 718
            K Q   QDT   T+ +L+       IW+Q++
Sbjct: 927  KWQHKSQDTTEVTKYILQYKEGDAGIWQQQE 957


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 626  KQQRHLQDTEHRTRDVLETGRERGQIWRQED 718
            K Q   QDT   T+ +L+       IW+Q++
Sbjct: 923  KWQHKSQDTTEVTKYILQYKEGDAGIWQQQE 953


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 104 YPYATTSPSEALTI 63
           YP ATTSP    TI
Sbjct: 396 YPMATTSPQSQSTI 409


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -3

Query: 425 WPSCHNLYANDMAFLMPCETSRETTSRQTPE 333
           WP C  +  +  AFL    T      R T +
Sbjct: 285 WPGCEVICEDYQAFLKHLNTEHTLDDRSTAQ 315


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  STGPISKRCAADVARIVNASEGLVVAYGYSENSD 120
           +T PI+ RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 641 LQDTEHRTRDVLETGRERG 697
           LQD E+  R +  T RERG
Sbjct: 468 LQDREYCPRYIKWTNRERG 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,546
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)