Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00384
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50420.1 68418.m06244 expressed protein strong similarity to ...    31   0.76 
At3g61690.1 68416.m06913 expressed protein                             30   1.8  
At2g16980.2 68415.m01957 expressed protein                             29   3.1  
At2g16980.1 68415.m01956 expressed protein                             29   3.1  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    28   5.4  
At2g40540.1 68415.m05002 potassium transporter, putative (KT2) i...    28   5.4  
At2g25730.1 68415.m03084 expressed protein                             28   7.1  
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    27   9.4  
At5g10150.1 68418.m01175 expressed protein                             27   9.4  
At2g39950.1 68415.m04909 expressed protein                             27   9.4  

>At5g50420.1 68418.m06244 expressed protein strong similarity to
           unknown protein (gb|AAD50008.1)
          Length = 566

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +1

Query: 40  RCAADVARIVNASEGLVVAYGYSENSDDIQNLERELVKRAYTMEPGTNCPQT*RPRRNSA 219
           + A  +ARIV  S G V+       S D    E  L++    ++ G   P   RP RNSA
Sbjct: 438 QAAECIARIVERSNGAVIYL-----STDAAESETSLLQSLVVVD-GKIVPLVKRPPRNSA 491

Query: 220 QKW 228
           +KW
Sbjct: 492 EKW 494


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 401 RTNCGTRATRTSSKITSRANSNSYSTKRELNSS 499
           + NCGT  T   +  T ++  NSY   +E+NS+
Sbjct: 434 QNNCGTEITSRVTYQTQKSRGNSYQPAQEVNSN 466


>At2g16980.2 68415.m01957 expressed protein 
          Length = 461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 86  SSLHTDILKILTTFKISSVSW*KGLILWSRVRTARRLED-PDGIQHKNGLCRRKVNQHH 259
           +SL    L I +TF+++++S   GL+ + RV    RL+D  D  +  +G CR     H+
Sbjct: 160 ASLSARFLSIASTFQVAAISLFIGLV-YMRVFLKERLQDADDDDEADSGGCRSHQEVHN 217


>At2g16980.1 68415.m01956 expressed protein 
          Length = 408

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 86  SSLHTDILKILTTFKISSVSW*KGLILWSRVRTARRLED-PDGIQHKNGLCRRKVNQHH 259
           +SL    L I +TF+++++S   GL+ + RV    RL+D  D  +  +G CR     H+
Sbjct: 160 ASLSARFLSIASTFQVAAISLFIGLV-YMRVFLKERLQDADDDDEADSGGCRSHQEVHN 217


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 387 RHVVRVQIVARGPQGHRRRLLP---ERIPTHTRPKEN*THRQPFNQALK 524
           R+  R +  +R P G+RRRL      + P H    ++   RQP +Q LK
Sbjct: 482 RYNRRRRSTSRSPDGYRRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLK 530


>At2g40540.1 68415.m05002 potassium transporter, putative (KT2)
           identical to putative potassium transporter AtKT2p
           [Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong
           similarity to potassium transporter HAK2p
           [Mesembryanthemum crystallinum] GI:14091471; KUP/HAK/KT
           Transporter family member, PMID:11500563
          Length = 794

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   VKTVTISTGPISKR-CAADVARIVNASEGLVVAYGYSENSDDIQNLERELVKR 156
           VK+V +   P ++R     V  + + S   +V YGY +   D+ + E ELV +
Sbjct: 565 VKSVPVPFVPPAERYLVGRVGPVDHRSYRCIVRYGYRDVHQDVDSFETELVSK 617


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 259 LVQLGYGRRLHQRGEDCAHLDDNQGSGVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKDIV 438
           +VQ+   R   +  ED    D+N G G C  V+  ++  G++           EG   I 
Sbjct: 102 MVQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIE 161

Query: 439 EDYFPSEFQLILD 477
           ED   S   ++LD
Sbjct: 162 EDAVVSLRSIVLD 174


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 375  GHQERHVVRVQIVARGPQGHRRRLLPERIPTHTRPKE 485
            G Q +HV+R+Q  ++ P+G ++R L E      RPK+
Sbjct: 1440 GRQLKHVIRLQDESKVPEGSKKRKL-ETKRGRGRPKK 1475


>At5g10150.1 68418.m01175 expressed protein
          Length = 414

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +2

Query: 470 YSTKRELNSSATIQSSSQTGC*R*PVQ---RPPNLGRWKRLHQL---PSQLATHLSLGKQ 631
           Y  K    SS T QS    G     ++   + PNL + ++  Q+    S L     + K 
Sbjct: 193 YEEKTSYTSSTTPQSRCSRGVSTETMESTEQKPNLTKTEQDLQVRSDSSDLTRSNPVVKP 252

Query: 632 QRHLQDTEHRTRDVLETGRERGQIWRQ 712
           +RH   T     D +E G  RG +W Q
Sbjct: 253 RRHEVSTRVEDGDPVEPGSGRGSMWLQ 279


>At2g39950.1 68415.m04909 expressed protein
          Length = 636

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 407 NCGTRATRTSSKITSRANSNSYSTKRELNSSATIQSSSQT 526
           +CGT+ T+T   ++ RA+S   +T R  N+S  I S  ++
Sbjct: 313 HCGTQQTKTQGSLSPRASSFKENTLR--NASLRISSRDKS 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,012,638
Number of Sequences: 28952
Number of extensions: 308073
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)