Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00382
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    26   0.25 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.25 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.25 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + DK      +  STQA  ++  +     W C
Sbjct: 540 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYVQYDQGEDRWLC 584


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + DK      +  STQA  ++  +     W C
Sbjct: 773 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYVQYDQGEDRWLC 817


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + DK      +  STQA  ++  +     W C
Sbjct: 773 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYVQYDQGEDRWLC 817


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SW 278
           C+ GC +L R   + DK      +  STQA  ++  +     W
Sbjct: 226 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYVQYDQGEDRW 268


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 274 VGNVMPVGAMPEGNIVCNLEEKMGDRGRLARASGNFA 384
           VG  +      EG     L E +GD G+L  AS +FA
Sbjct: 91  VGTALTFCLQEEGGTTSQLIELLGDAGKLL-ASVHFA 126


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + D       + SS++A  ++  +     W C
Sbjct: 800 CSPGCFSLFRGKALMDDNVMKKYTTSSSEARHYVQYDQGEDRWLC 844


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + D       + SS++A  ++  +     W C
Sbjct: 800 CSPGCFSLFRGKALMDDNVMKKYTTSSSEARHYVQYDQGEDRWLC 844


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + D       + SS++A  ++  +     W C
Sbjct: 800 CSPGCFSLFRGKALMDDNVMKKYTTSSSEARHYVQYDQGEDRWLC 844


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVKESNS*SWKC 284
           C+ GC +L R   + D       + SS++A  ++  +     W C
Sbjct: 800 CSPGCFSLFRGKALMDDNVMKKYTTSSSEARHYVQYDQGEDRWLC 844


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 537 YHKYKVKRNCWPYVRG-VAMNPVEHPHGGGKHQHIGKASTV 656
           YH      NC P  +       +E P GGGK + + K  T+
Sbjct: 87  YHLGSYAANCPPSPKDDEKCLSLERPSGGGKGKKMRKPRTI 127


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 225 FGSNEELLPCLELVWIAEVYNSQRCT-STRVMDY 127
           FG+   L    +L+W  EV N  R      + DY
Sbjct: 180 FGARHGLETLNQLIWFDEVVNELRILHGVEIRDY 213


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 397 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIANL 516
           H+P A  +   LP+GA   L  ++ G+V  +A G  +  L
Sbjct: 35  HSPCATGSN-GLPAGAGSNLLCASNGLVTTLASGSSLNGL 73


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 372  WKLRHCDWTQS 404
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 452 TFLAPDGSFTLVR 414
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,585
Number of Sequences: 336
Number of extensions: 3840
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)