Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00382
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 221 1e-58
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 221 1e-58
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 221 1e-58
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 40 3e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.27
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 30 0.36
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 26 4.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 5.8
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 7.7
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 7.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 221 bits (539), Expect = 1e-58
Identities = 105/168 (62%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Frame = +1
Query: 7 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
QRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY
Sbjct: 8 QRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPY 66
Query: 187 KFKTRKELFIAPEALHR-PICLL*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
++T E F+A E ++ K A L VGNV+PVG MPEG I+ N+EEK GDRG L
Sbjct: 67 HYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALG 126
Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRI 507
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRI
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 105 bits (251), Expect = 8e-24
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +3
Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
KP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG HQH+G ++TV R ++ G+K
Sbjct: 176 KPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 221 bits (539), Expect = 1e-58
Identities = 105/168 (62%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Frame = +1
Query: 7 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
QRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY
Sbjct: 8 QRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPY 66
Query: 187 KFKTRKELFIAPEALHR-PICLL*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
++T E F+A E ++ K A L VGNV+PVG MPEG I+ N+EEK GDRG L
Sbjct: 67 HYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALG 126
Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRI 507
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRI
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 105 bits (251), Expect = 8e-24
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +3
Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
KP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG HQH+G ++TV R ++ G+K
Sbjct: 176 KPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 221 bits (539), Expect = 1e-58
Identities = 105/168 (62%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Frame = +1
Query: 7 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
QRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY
Sbjct: 8 QRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPY 66
Query: 187 KFKTRKELFIAPEALHR-PICLL*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
++T E F+A E ++ K A L VGNV+PVG MPEG I+ N+EEK GDRG L
Sbjct: 67 HYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALG 126
Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRI 507
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRI
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 105 bits (251), Expect = 8e-24
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +3
Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
KP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG HQH+G ++TV R ++ G+K
Sbjct: 176 KPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 570 PYVRGVAMNPVEHPHGGGKHQHIG 641
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 494 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 324
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 353 PLSPIFSSRLHTMLPSGIAPTGITFPTSRVAFFHNKQIG 237
P++P+F SR H P G+ T FP F+ N IG
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFYGNLYIG 47
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMN 596
KPI K+K K +CW +RG N
Sbjct: 70 KPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 1 TCQRKGAGSVFVSHTKKRKGAPKLRSLD 84
T +R+G+ +HTK+ K APK D
Sbjct: 165 TRKRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 570 PYVRGVAMNPVEHPHGGGKHQHIGKASTVK 659
PY R V + E PH G K+ + A T++
Sbjct: 55 PYFREVVLMSFECPHCGFKNAQVQHAETIQ 84
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 311 PSGIAPTGITFPTSRVAFFH---NKQIGLCRASGAMKSSFLV 195
P+ +PTGI R+ F+ NK++G C+A + ++ LV
Sbjct: 273 PAYQSPTGIN-TLRRILLFYSETNKEVGYCQAMNIVLAALLV 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,073
Number of Sequences: 5004
Number of extensions: 63370
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -