Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00382
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 221 5e-58
07_01_1201 - 11419851-11419913,11420090-11420311 33 0.16
03_03_0091 - 14371528-14372661 31 0.85
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 2.6
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.6
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 4.5
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 28 6.0
07_03_0158 + 14552665-14554209 28 7.9
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 221 bits (539), Expect = 5e-58
Identities = 102/167 (61%), Positives = 130/167 (77%), Gaps = 1/167 (0%)
Frame = +1
Query: 7 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
QRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+
Sbjct: 8 QRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPF 67
Query: 187 KFKTRKELFIAPEALHR-PICLL*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
++K +KELF+A E ++ ++ATL +GNV+P+ ++PEG +VCN+E +GDRG A
Sbjct: 68 RYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFA 127
Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGR 504
RASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR
Sbjct: 128 RASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGR 174
Score = 110 bits (264), Expect = 1e-24
Identities = 46/58 (79%), Positives = 50/58 (86%)
Frame = +3
Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG HQHIG ASTV+R G+K
Sbjct: 177 KPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 234
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 509 AIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 330
A+ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 329 RL 324
R+
Sbjct: 71 RV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 31.1 bits (67), Expect = 0.85
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 324
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 323 HTMLPSGIAPTGITFP 276
ML +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +3
Query: 147 RCTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFIVK 257
RCT G CTL S V EG L+C +Q LF+VK
Sbjct: 138 RCTHGGCTLSPSNNV-THEGKLYCKTHHSQ--LFMVK 171
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 369 LWKLRHCDWT 398
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 435 VWSQEGSAIKQQRHGRYCCWRWTYCKPILKAGRAYHKYKVKRNC 566
V + S Q+ Y CWR C I+++G Y + +C
Sbjct: 23 VCKPDQSPAAMQKAIDYACWRGADCTQIMQSGACYQPSTIVAHC 66
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 430 LPSGAKKVLPSSNRGMVGIVAGGGRIANLF*KLEGHTTSTRSNVT 564
LPS A RG G+V GGG + + +L+G T ST +++
Sbjct: 69 LPSSAAVATSGGGRGGGGVVVGGGG-GDPWRRLDGSTASTELSLS 112
>07_03_0158 + 14552665-14554209
Length = 514
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 359 RRPLSPIFSSRLHTMLPSGIAPTG-ITFPTSRVAFFH--NKQIGLCRASGAMKSSFLVLN 189
RRP + SS ++LP +P+ +T + H + ++GL RA + +SFL+L
Sbjct: 54 RRPDAFTLSSLAASLLPPAHSPSASVTAAAAAAGCLHAFSLRLGLLRADPVLANSFLLLY 113
Query: 188 L 186
L
Sbjct: 114 L 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,196
Number of Sequences: 37544
Number of extensions: 458225
Number of successful extensions: 1361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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