Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00382
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             255   2e-68
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       177   7e-45
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    41   8e-04
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   33   0.16 
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.5  
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   8.1  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  255 bits (625), Expect = 2e-68
 Identities = 121/168 (72%), Positives = 138/168 (82%), Gaps = 1/168 (0%)
 Frame = +1

Query: 7   QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
           QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY
Sbjct: 8   QRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPY 67

Query: 187 KFKTRKELFIAPEALHR-PICLL*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
           ++K RKELF+A E ++        KKA L++GN +PVG MPEG I+ ++EEK GDRGRLA
Sbjct: 68  RYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLA 127

Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRI 507
           R SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRI
Sbjct: 128 RTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRI 175



 Score =  115 bits (277), Expect = 3e-26
 Identities = 49/58 (84%), Positives = 51/58 (87%)
 Frame = +3

Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
           KP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGG HQHIG  STV+R T AGRK
Sbjct: 177 KPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRK 234


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  177 bits (431), Expect = 7e-45
 Identities = 83/123 (67%), Positives = 99/123 (80%), Gaps = 1/123 (0%)
 Frame = +1

Query: 112 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLL*KKATLEVGNVM 288
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E ++        KKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 289 PVGAMPEGNIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 468
           PVG MPEG I+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120

Query: 469 RGM 477
           R +
Sbjct: 121 RAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
 Frame = +1

Query: 106 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPICLL*KK------AT 267
           IK  V  + +DP R A +A+V          +++L IAP+ +     +   +      A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 268 LEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 447
           L+ G+  P+  +P G +V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 448 KVLPSSNRGMVGIVA 492
           K + S     VG V+
Sbjct: 170 KEVSSKCLASVGRVS 184


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 23/47 (48%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 557 FDLVLVVCPSSFQNRFAIRP--PPATIPTMPLLLDGRTFLAPDGSFT 423
           F L   V PSS QN F      P AT   + L+LD  TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 358  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 486
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1157

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 26/85 (30%), Positives = 34/85 (40%)
 Frame = -1

Query: 539 VCPSSFQNRFAIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARA 360
           + P S  N  A  PPP+T P  P     R+        T      G+   T ++   A A
Sbjct: 274 IIPVSINNIMAPSPPPSTFPPTP--TPSRSNWTIPELDTPAPSIMGIA--TPSRRVLATA 329

Query: 359 RRPLSPIFSSRLHTMLPSGIAPTGI 285
            RP   +  +RL   LPSG    GI
Sbjct: 330 LRPPLQVSHTRLEFSLPSGYFDLGI 354


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 492 WRWTYCKPILKAG-RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHI 638
           W W+  + + KA  R+YH   + R     + GV  NP   P G     H+
Sbjct: 530 WTWSLVQTVGKAPTRSYHSCTLYRGEMWVIGGVYPNPDPQPDGCSNDVHV 579


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 277 GNVMPVGAMPEGNIVCNLEEKMGDRGRLAR-ASGNFATVIG 396
           G+  PV  +P G+ +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 417 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAH--NVTLRHSSNRHHISNFKSCFLSQ*T 244
           T SI ++ + +   + GTC+     +  FK+ H   + + H  + H ++N   C +   +
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 243 NWPV*SFGSNEELLP 199
           N    SF   +++ P
Sbjct: 136 NQRCVSFNLKKQITP 150


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 225  SSTQANLFIVKESNS*SWKCDACW 296
            SST   LF  +   + SW CD CW
Sbjct: 1762 SSTSNGLFNKQAPPTGSWTCDTCW 1785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,104,517
Number of Sequences: 59808
Number of extensions: 519660
Number of successful extensions: 1370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)