Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00382
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   244   3e-65
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    34   0.11 
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    28   5.4  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    28   5.4  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    28   5.4  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    28   5.4  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    28   5.4  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        28   7.1  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  244 bits (598), Expect = 3e-65
 Identities = 110/167 (65%), Positives = 134/167 (80%), Gaps = 1/167 (0%)
 Frame = +1

Query: 7   QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 186
           QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPY
Sbjct: 8   QRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPY 67

Query: 187 KFKTRKELFIAPEALHRPICL-L*KKATLEVGNVMPVGAMPEGNIVCNLEEKMGDRGRLA 363
           K+KT K   +A E +H    +    KA +++GN++PVG +PEG  +CN+E K GDRG +A
Sbjct: 68  KYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIA 127

Query: 364 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGR 504
           RASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR
Sbjct: 128 RASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGR 174



 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/58 (79%), Positives = 50/58 (86%)
 Frame = +3

Query: 510 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTSAGRK 683
           KP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGG HQHIG  STV+R  SAG+K
Sbjct: 177 KPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKK 234


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 277 GNVMPVGAMPEGNIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 435
           GN  P+G++  G ++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 97  HGYIKGVVKDIIHDPGRGAPLAVVHFR 177
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 97  HGYIKGVVKDIIHDPGRGAPLAVVHFR 177
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 IGHNPDAKRTRVKLPSGAKKVL 456
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 486 CCWRWTY-CKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 605
           CCW     C  +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 486 CCWRWTY-CKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 605
           CCW     C  +  A  AYH    ++  +P V+GV    VE
Sbjct: 283 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 323


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 486 CCWRWTY-CKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 605
           CCW     C  +  A  AYH    ++  +P V+GV    VE
Sbjct: 289 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 329


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 486 CCWRWTY-CKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 605
           CCW     C  +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 486 CCWRWTY-CKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 605
           CCW     C  +  A  AYH    ++  +P V+GV    VE
Sbjct: 301 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 341


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 34  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 159
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 537 YHKYKVKRNCWPYVRGVAMNPVEHPHGGGKHQHIGKASTVKRGTS 671
           Y+K++   +  P++  ++  P +H   G     +GK+ T    TS
Sbjct: 414 YNKHQNTHSSMPHIAHISSQPADHSFSGTLDARVGKSVTRDPSTS 458


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 428  SYRLEPRRFCHQATEA--WSVLLLEVDVLQTYFESWKGIPQVQGQ 556
            S+   PR   H  TE   W  L L +  L+ Y+E+W    Q++ Q
Sbjct: 1259 SHEYVPRILEHVKTEKDLWYTLRLVMPYLRRYYENWDTAKQMRSQ 1303


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 428  SYRLEPRRFCHQATEA--WSVLLLEVDVLQTYFESWKGIPQVQGQ 556
            S+   PR   H  TE   W  L L +  L+ Y+E+W    Q++ Q
Sbjct: 1257 SHEYVPRILEHVKTEKDLWYTLRLVMPYLRRYYENWDTAKQMRSQ 1301


>Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical
           protein T11F9.8 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 428 SYRLEPRRFCHQATEAWSVLLLEVDVLQTYFESWKGIPQV 547
           S R EP     QATE W  + + +D    Y E+ + +PQV
Sbjct: 58  SQRAEPGA-TFQATETWQNVTISLDAGYRYLENNQKLPQV 96


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 428  SYRLEPRRFCHQATEA--WSVLLLEVDVLQTYFESWKGIPQVQGQ 556
            S+   PR   H  TE   W  L L +  L+ Y+E+W    Q++ Q
Sbjct: 1257 SHEYVPRILEHVKTEKDLWYTLRLVMPYLRRYYENWDTAKQMRSQ 1301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,098
Number of Sequences: 27780
Number of extensions: 374304
Number of successful extensions: 989
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)