Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00382
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 650 GSLTYMLMFTTTVRMLXRVH 591
           GS+TY + FTTT+  +  +H
Sbjct: 147 GSVTYGMRFTTTLACMMDLH 166


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 IGHNPDAKRTRVKLPSGAKKVL 456
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 309 LRHSSNRHHISNFKSCFLSQ*TNWPV*SFGSNEEL--LPCLELVW 181
           ++H + RH+  N     LS+   W V    + +E+  +P   + W
Sbjct: 221 IKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKW 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,959
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)