Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00381
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.3  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   8.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
 Frame = +2

Query: 251 SSM*TNS--LRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLS 418
           SS  TNS  L ++  + T  +  PTG  S L T  T T+P TS ++ S  +P     S  
Sbjct: 213 SSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 272

Query: 419 GALQTSPGLSTRPKIVVAYGYSENSDDIQNSSVSLAKTAYTMEP 550
                 P  ST      +   + NS      +V    T+ T  P
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 316



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 278 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQTSPGLST 451
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S        P  ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = +2

Query: 302 ESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGY 481
           E+KYPT SP+   +  + P    TTA+    SA   SL        G     +   A  Y
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308

Query: 482 SENSDDIQNSSVSLAKTAYTMEPG 553
             + +   +S       +YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 86  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 205
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 86  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 205
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 174 LSIGIFTRWYIPK*GIGEYAYNR 106
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = +2

Query: 149 HLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSSM*TNSLRSSVRATTRESK 310
           +L++  ++R L+H VDY G+  +  LD +    R+SM  +SLRS ++   ++ K
Sbjct: 72  NLLRKTLNRPLLHEVDYHGK-SLEILDMLLQ-SRNSM-ISSLRSELQEKNQKDK 122


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +2

Query: 332 CLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNS 511
           C+W+       S T A   LP+    S S     S G S R   V+   Y +    ++ S
Sbjct: 153 CVWSVPIGIFVSFTAADNTLPTITTPSSSSPDAYSSGSSRRTSNVLRQAYKKLGIFVERS 212

Query: 512 SVSL 523
             SL
Sbjct: 213 LTSL 216


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 374 TASKLLPSARGRSLSGALQTSPG-LSTRPKIVVAYGYSENSDDIQNSSVSLAKTAYTMEP 550
           T S+  P++     S  L TS    ST+P    AY +   S  +     SLA+T +  E 
Sbjct: 61  TPSRNTPNSSNGFPSETLVTSSAHCSTQPHKDEAYSHHGYSSTMALDDSSLAQTYHEYEE 120

Query: 551 GTN 559
           GT+
Sbjct: 121 GTS 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,676
Number of Sequences: 5004
Number of extensions: 55984
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)