Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00381
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.31 
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    33   0.31 
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)               30   1.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  30   1.7  
SB_18282| Best HMM Match : SEC-C (HMM E-Value=2.6)                     30   2.2  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   5.0  
SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   8.8  

>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 314  PTGSPSCLWTTATLPVTSETTASKLLPSAR--GRSLSGALQTSPGLSTRPKIVVAYGYSE 487
            P G P      +    +SETT  KLLP  +  G S    L+ +P ++  P++      SE
Sbjct: 1511 PEGKPGSPGQPSRQSASSETTNEKLLPGKQSPGASSDTELKGTPSVTNTPQLQGTSSASE 1570

Query: 488  NSDDIQNSSVSLAKT 532
            ++   Q+S  + + T
Sbjct: 1571 STQTQQSSQTTQSTT 1585


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
 Frame = +2

Query: 233  IRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRS 412
            +   P  S+  N   SSV  T   +  PT SPS   TT+++  T    A+  +  +   +
Sbjct: 725  VNATPTISLSPNGTTSSVYETIAVNATPTISPSPNGTTSSVYETIAVNATPSISLSTNET 784

Query: 413  LSG-----ALQTSPGLSTRPKIVVAYGYSENSDDIQNSSVSLAKTAYTMEP 550
             S      A+ ++P +S  P    ++ Y   + +  ++SV  +K   T+ P
Sbjct: 785  ASSPYETIAVNSTPSISPSPNGTTSFMYETIAVNATSTSVRTSKVYETILP 835


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +2

Query: 299 RESKYPTGSPSCLWTTATLPVTSE--TTASKLLPSARGRSLSGALQTSPGLSTRPKIVVA 472
           +ES   + S     TT +   T E  TTA+     A G +LS     +PG +   +I V 
Sbjct: 380 QESTIASESSGAPGTTESSESTVEPLTTAASESTVAPGTTLSPESTVAPGTTVASEITVT 439

Query: 473 YGYSENSDDIQNSSVSLAKTAYTMEPGT 556
            G +  SD   +S  +L ++  T+ PG+
Sbjct: 440 RGTTVASDSTFSSGTTL-RSKSTITPGS 466



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +2

Query: 263  TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 442
            T +L +S+ +   ES   +G+     +T    V  ETT +      RG +++ A   +PG
Sbjct: 1512 TVTLETSISSEASESTVASGTTLAPEST----VAPETTVASESTVTRGATVASASTDAPG 1567

Query: 443  LSTRPKIVVAYG--YSENSDDIQNSSVSLAKTA 535
             +  P+     G   S  S   Q S+VS   TA
Sbjct: 1568 TTVSPESTFTPGTTVSPESTVAQESTVSSESTA 1600


>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
          Length = 585

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 302 ESKYPTGSPSCLWTTATLPVTSE--TTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAY 475
           ES   + S +   TT +   T E  TTA+     A G +LS     +PG +   +I V  
Sbjct: 353 ESTIASESSAAPGTTESSESTVEPLTTAASESTVAPGTTLSPESTVAPGTTVASEITVTR 412

Query: 476 GYSENSDDIQNSSVSLAKTAYTMEPGT 556
           G +  SD   +S  +L ++  T+ PG+
Sbjct: 413 GTTVASDSTFSSGTTL-RSKSTITPGS 438


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +2

Query: 233  IRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRS 412
            I G P S   +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +
Sbjct: 935  INGAPVSKT-SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASA 992

Query: 413  LSGALQTSPGLSTRPKI 463
            ++G++ TS   +  P I
Sbjct: 993  INGSI-TSKTSTGNPSI 1008


>SB_18282| Best HMM Match : SEC-C (HMM E-Value=2.6)
          Length = 269

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 582 DGIQHEDGLCRRNVNQQPLVQLGYGRRLHQRGEDCAQSRRQPGLRRL 722
           +G   ED   RR + Q+    LG+ R LH+    C ++   PG  +L
Sbjct: 82  EGTSKEDHKRRRELEQEVHEYLGFPRILHREDGRCGENVTAPGSTKL 128


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 32/118 (27%), Positives = 48/118 (40%)
 Frame = +2

Query: 206  EGKVTNLDKIRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASK 385
            E K T +  I   PR    T S   +   TT   K  TG+ S + TT      SETT + 
Sbjct: 911  ETKSTTISAIESSPR----TASTVETTPWTTPPVKTTTGTRSSIETTPETTSPSETTPTT 966

Query: 386  LLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNSSVSLAKTAYTMEPGTN 559
                +   + +  + T+ G +T P+       +  S D + +S S+ K A      TN
Sbjct: 967  ATSMSTDGTTAAPMSTN-GTTTAPRNTDGRTAAPMSTD-ETTSASMTKHATAAPITTN 1022


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +2

Query: 356 PVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNSSVSLAKTA 535
           P   ETT + L  +A   + +  + T+P  +T P+  +A   +   +    S V+ A   
Sbjct: 464 PTAPETTTASLATTAPETTTASLVTTAPETTTAPEATLAPEATTAPEAATASLVTTAPET 523

Query: 536 YTMEPGTNCPQT 571
            T    T  P+T
Sbjct: 524 TTASLATTAPET 535



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 278 SSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTR 454
           S  R  T  +   T +P    TTA+L  T+ ETT + L  +A   + +  L T+P  +T 
Sbjct: 48  SEKRKKTTTASLATTAPET--TTASLVTTAPETTTASLATTAPETTTASFLTTAPEATTA 105

Query: 455 PKIVVA 472
           P+   A
Sbjct: 106 PETTTA 111



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 341 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNSSV 517
           TTA+L  T+ ETT + L+ +A   + +    T+P  +T P+   A   +   +    S V
Sbjct: 542 TTASLATTAPETTTASLVTTAPEATTASLATTAPEATTAPETTTALLVTTAPETTTASLV 601

Query: 518 SLAKTAYTMEPGT 556
           + A  A T    T
Sbjct: 602 TTAPEATTASLAT 614



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 341 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNSSV 517
           TTA+L  T+ ETT + L  +A   + +  + T+P  +T P+   A   +   +       
Sbjct: 722 TTASLATTAPETTTASLATTAPETTTASLVTTAPEATTAPEATTASLVTTAPEATTAPET 781

Query: 518 SLAKTAYTMEPGTNCP 565
           + A  A T    T  P
Sbjct: 782 TTASLATTASLATTAP 797


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +2

Query: 362 TSETTASKLLPSARGRSLSGALQTS-PGLSTRPKIV--VAYGYSENSDDIQNSSVSLAKT 532
           T ET  S +   A  R  S A Q S P L  +         G +  S    +++++  K 
Sbjct: 128 TRETATSSINTEATSRQPSTATQVSGPSLPMQHSTEHHSTSGVASPSTKQPSTALTTTKQ 187

Query: 533 AYTMEPGTNCPQT*RPRRHSARRWSLPTQRQ 625
             T +  TN P T +P  +     +LP+ +Q
Sbjct: 188 PTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQ 218


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 TLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENS 493
           T P+T   T     P + GRS SGA+++S   S   K V A  +  +S
Sbjct: 295 TNPLTLRNTVDSSSPVSGGRSYSGAIKSSLSSSVNSKPVEATSHVADS 342


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 287 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 460
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 166 DRQRAGTPCRLLGRRKSD*P*QDKRLPSELNVNEQFALVSKGH 294
           +R       R+LG   SD P  +KR   E  V ++ A +SK +
Sbjct: 12  ERYTQAVDTRVLGMNVSDVPQLEKRATDEATVGKEVAAISKAY 54


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 104 PHLCRSLAQRRLPILPLTVFLPVK 33
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,959
Number of Sequences: 59808
Number of extensions: 445530
Number of successful extensions: 1163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)