Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00381
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   1.8  
At1g19680.1 68414.m02453 expressed protein                             29   4.1  
At5g67440.1 68418.m08503 phototropic-responsive NPH3 family prot...    28   7.2  
At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    28   7.2  

>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 647 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 561
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 121 LPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD 219
           LP+     +PPR  P R+  G+P + L R+ SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


>At5g67440.1 68418.m08503 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 579

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
 Frame = +2

Query: 284 VRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKI 463
           VRATT+ S  P+GS     TT      S T   +   + R ++ S     + G+    +I
Sbjct: 475 VRATTKPSLPPSGSHGSSRTTTEEECESVTATEETTTTTRDKTSSSEKTKAKGV-VMSRI 533

Query: 464 VVAYGYSENSD---DIQNSSVSLAKTAYTMEPGTNCPQT*RPRRHS 592
                  ++ D   D+ +S  S +  + T     + P T R R  S
Sbjct: 534 FSKLWTGKDKDGVGDVSSSDTSESPGSVTTVGDKSTPSTRRRRSSS 579


>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 338 WTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKIVVAYGYSENSDDIQNSSV 517
           W    L     + A   + +A+ R +S + + S   S+RPKI      ++  DD    S+
Sbjct: 671 WDLEPLDEPKPSPALANIQAAQKRPVSQSSRPSAATSSRPKISTVKAAAKTEDDDLWGSI 730

Query: 518 SLAKTAYTMEP 550
           +    A T  P
Sbjct: 731 AAPPPATTSRP 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,944
Number of Sequences: 28952
Number of extensions: 306259
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)