Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00378
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    31   0.18 
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    28   1.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   5.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   5.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.7  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   8.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.9  

>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 28/100 (28%), Positives = 48/100 (48%)
 Frame = +3

Query: 3   SLEKTLFSFGAIESNRNIEDLINMSGLRSVQVVNVNDNHNYVLEDNTLQRILLREDVKDL 182
           +LE  L+S   ++  R  E   + SG+R + ++   D+H   L ++ +  I  R    + 
Sbjct: 107 ALEIALWSLIRVDDQRLFELCHSKSGIRLLSIIFDFDSHPDWLREDVMFNIAERILKSNF 166

Query: 183 PLVVVSVAAAYRGGKSFLLSYFLRTSTHRRKSETKMATGW 302
           P V+V+VA+   G KS    YFL      +    + ATG+
Sbjct: 167 PNVLVNVASKI-GPKSI---YFLIDCMSHKIKLKETATGF 202


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 436 GYTRHLRLQQHSARLLHNICALYPISSVQI 525
           G  R++ L + SA  +    A+YP+S+VQ+
Sbjct: 148 GKIRYIGLSECSANTIRRAAAVYPVSAVQV 177


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 559 LQYLQLFTEYGKLLKKRRRLQSVSDANVPYQR 654
           L +LQ F+E  +LLKKR+   S+   NV Y++
Sbjct: 543 LSHLQNFSE--ELLKKRKLFSSLFSNNVSYKK 572


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 221 RKVLLAKLLPPHLNSPTEKRNENGDWLGNET 313
           R++ L + L      P EKR+ENG+  G ET
Sbjct: 34  RRLQLEQRLAQQAQVPWEKRSENGNNAGMET 64


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 551 RTIFNTYSYLPSTGNYLKNEDGSKAFQMLMFLI 649
           +T FN++      GN++ + DG  +F M  FL+
Sbjct: 628 KTQFNSHLIWGLVGNHIFSSDGRYSFVMWFFLV 660


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 599 LKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEELLKKE 718
           + +E  +K    +  L++ W + Y H    K  +E +KK+
Sbjct: 1   MHDESRTKQISSIKALLKKWEHEYVHTNNCKPSKEDVKKQ 40


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 341 GGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQG 448
           G   +HTT +LM   P + T  A E    L   T+G
Sbjct: 746 GAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKG 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,508
Number of Sequences: 5004
Number of extensions: 64824
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)