Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00378
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 33 0.19
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 31 0.76
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 31 0.76
04_03_0479 - 16420948-16421238,16421519-16421764,16422676-164228... 29 3.1
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600... 29 3.1
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 29 5.3
04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362... 29 5.3
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936... 28 7.1
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 9.3
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 28 9.3
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 177 DLPLVVVSVAAAYRGGKSFLLSYFLRTST-------HRRKSETKMATGWGT 308
+ P+ V+V YR GKSFLL+ L + H R ++TK WGT
Sbjct: 62 ETPIAAVAVIGPYRSGKSFLLNQLLSLTCNKGFGVGHMRDTKTKGIWVWGT 112
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 177 DLPLVVVSVAAAYRGGKSFLLSYFLRTSTHR 269
+ P+ VV V YR GKSFLL+ L S +
Sbjct: 59 ETPIAVVGVIGPYRSGKSFLLNQLLSLSCEK 89
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -1
Query: 372 SMPVVCLSDPPFQLNPIKGSVSFPNQSPFSFRFSVGEL 259
S+P+ C+SDP + P+K VSFP Q P R+S+ L
Sbjct: 140 SLPLACISDPMKKPVPLKLDVSFP-QLP-DIRWSISRL 175
>04_03_0479 -
16420948-16421238,16421519-16421764,16422676-16422811,
16422903-16423121,16423715-16423748,16424092-16424335
Length = 389
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 278 RNENGDWLGNETDPLIGFSWKGGS--ERHT-TGILMYPEPFITTTAAGEKVAVLLMDTQG 448
++++G W + T +G S+ E +T + +L Y E T K+ VL++
Sbjct: 88 KDDDGRWWKDLTG-YVGLSYLRDRLVESYTWSQMLFYEEGLALTRIIFTKIIVLMVIMDD 146
Query: 449 TFDSSSTVRDC 481
T+DS +T+++C
Sbjct: 147 TYDSHATIQEC 157
>01_06_1642 +
38857326-38857581,38858577-38858818,38859001-38860004,
38860170-38860587,38860673-38860789
Length = 678
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 761 RSHSSFWHFICNFKSLFLIALHLLW-HRKH 675
+ H +FW+ K LFL+ L +LW H KH
Sbjct: 612 KEHDNFWNSRWTRKFLFLLCLAVLWKHWKH 641
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/51 (19%), Positives = 29/51 (56%)
Frame = +1
Query: 445 RHLRLQQHSARLLHNICALYPISSVQIYNLKENLQEDDLQYLQLFTEYGKL 597
RH+ ++ +S ++ + + + ++ IY++K + ++ ++ +FT KL
Sbjct: 577 RHISIETYSRAIIQKVLEMENLRTLIIYSVKTEMLIEEKEFEDMFTRLRKL 627
>04_03_0481 +
16433648-16433746,16435136-16435394,16435883-16436261,
16436498-16436716,16436814-16436949,16437502-16437717,
16437773-16437835
Length = 456
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 368 ILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDC 481
+L Y E T K+ VL++ T+DS +T+++C
Sbjct: 273 MLFYEEGLAFTRITFTKIIVLIIMMDDTYDSHATIQEC 310
>11_04_0370 +
16891334-16891469,16891556-16891707,16893277-16893639,
16893832-16893929,16893983-16896029
Length = 931
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 439 YTRHLRLQQHSARLLHNICALYPISSVQIYNLKENLQEDDLQYLQLFTEYGKLLKKRRRL 618
Y R LR + R LH I L +SS+Q N + DL+ L+L E G + K +
Sbjct: 566 YLRELR-NMNKIRRLH-IYGLCNVSSIQDVNEAHLHSKKDLEILELDFESGGICKVHKEE 623
Query: 619 QSVSDA 636
V+ A
Sbjct: 624 ADVNQA 629
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 248 PPHLNSPTEKRNENGDWLGNETDPLIGFSWKGGSERHTT 364
PP P + + G WL N IGF GG+ + TT
Sbjct: 1045 PPKAEKPAGGKKKGG-WLKNIKSVAIGFIDSGGNSKSTT 1082
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 99 VNVNDNHNYVLEDNTLQRILLREDVKDLPLVVVSVAAAYRGGKSFLLSYFLRTSTHRRKS 278
V + DN N L D L+R+L ++ + L V G + ++ YF R RRK
Sbjct: 354 VQIPDNMNPQLAD-LLERLLCKDPANRITLQAVGEHPWVAGDQGPVVEYFCRCGFGRRKR 412
Query: 279 E 281
+
Sbjct: 413 D 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,268
Number of Sequences: 37544
Number of extensions: 436498
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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