Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00378
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 123 2e-28
SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28) 30 2.4
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 30 2.4
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 29 5.5
SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_50738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 123 bits (296), Expect = 2e-28
Identities = 70/160 (43%), Positives = 92/160 (57%), Gaps = 19/160 (11%)
Frame = +2
Query: 293 DWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTV 472
DWLG ET+ L GFSW+GGSER TTGILM+ +P+I GE+V VLLMDTQG FDSSSTV
Sbjct: 5 DWLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTV 64
Query: 473 RDCSIIFALST------LYRPFRSIISK----------RIFKRTIFNTYSYLPSTGNYLK 604
+DC+ IFALST L+ + + + K + N N +K
Sbjct: 65 KDCATIFALSTMTSSTQLFTEYGKLAMENNEIKPFQVNNEIKPFLLNNEIKPFQVNNEIK 124
Query: 605 ---NEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEELLKK 715
K FQ L+FL+RDW + YE +G GG ++L++
Sbjct: 125 PFQENKEIKPFQRLLFLVRDWSFPYEANYGEAGGSQILER 164
>SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 367 HTNVSGAIYHHYSCRRKGGSAVNGYTRHLRLQQHSARLLHNICALYPISSVQIYNLKENL 546
H V ++H +R VN + HL++ + S+ L N + + + +++NLK N
Sbjct: 115 HLKVDKRLFHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRLFNLKVNK 174
Query: 547 QEDDLQYLQLFTEYGK 594
+ L+ +F+ G+
Sbjct: 175 RYSHLKVNTIFSPEGE 190
>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
Length = 368
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 359 TTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTL 508
T GI M+ +P G++VA++ +DT+G ++ + + +FA++TL
Sbjct: 155 TMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATL 204
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -1
Query: 438 SINSTATFSPAAVVVINGSGYISMPVVCLSDPPFQLNPIKGSVSFPNQSPFSFRFSVGEL 259
SI TF P + + G +PV+ L P + L +K V+ P+ S + G +
Sbjct: 679 SIEFMVTFDPRSAGLSMGPVDAQVPVITLGGPLYGLR-LKAIVTMPDMSISTDTLDFGTV 737
Query: 258 RCG 250
CG
Sbjct: 738 ECG 740
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 TEKRNE-NGDWLGNETDPLIGFSWKGGSERH 358
+EK NE G+ GN D + W GGSE H
Sbjct: 785 SEKTNEIGGESSGNRKDKSVAKMWGGGSECH 815
>SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 TEKRNE-NGDWLGNETDPLIGFSWKGGSERH 358
+EK NE G+ GN D + W GGSE H
Sbjct: 388 SEKTNEIGGESSGNRKDKSVAKMWGGGSECH 418
>SB_50738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 212 LPWRKVLLAKLLPPHLNSPTEKRNENGDW 298
LP K+LL + PP +PT K+N+ DW
Sbjct: 50 LPCLKILLRLVKPP---APTSKKNKGKDW 75
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 212 LPWRKVLLAKLLPPHLNSPTEKRNENGDW 298
LP K+LL + PP +PT K+N+ DW
Sbjct: 2229 LPCLKILLRLVKPP---APTSKKNKGKDW 2254
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 515 DDIG*RAQILWSNLALCCWSRRCLVYPLTALPPFL 411
DDI R ++L S L +C WS + + LPP L
Sbjct: 16 DDIHKRGEVLCSVLEICDWSIEAAKHRNSKLPPNL 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,065,047
Number of Sequences: 59808
Number of extensions: 491839
Number of successful extensions: 1221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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