Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00378
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38840.1 68415.m04772 guanylate-binding family protein simila...    33   0.16 
At5g49150.1 68418.m06083 hypothetical protein                          32   0.48 
At3g32960.1 68416.m04176 hypothetical protein                          30   1.5  
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac...    30   1.5  
At3g63410.1 68416.m07139 chloroplast inner envelope membrane pro...    28   7.8  
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    28   7.8  

>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +3

Query: 183 PLVVVSVAAAYRGGKSFLLSYFLRTST-------HRRKSETKMATGWGT 308
           P+  V+V   YR GKSFLL+  L  S        H R ++TK    WGT
Sbjct: 59  PISAVAVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTKGIWVWGT 107


>At5g49150.1 68418.m06083 hypothetical protein
          Length = 896

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 383 EPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLYRPFRSIISKRIFKRTIF 562
           +PFI    AGE        TQ        +++  ++  L   Y P  S  S+  F+ T  
Sbjct: 347 QPFIKEVYAGEVNVAACSVTQFNGKVPKEIKNEIVVLLLDGFYNPVPSQPSRLKFEITSA 406

Query: 563 NTYSYLPSTGNYLKNEDGS 619
           NT S+  +T  ++ N DG+
Sbjct: 407 NTSSF--TTWEFVDNNDGT 423


>At3g32960.1 68416.m04176 hypothetical protein 
          Length = 214

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 269 TEKRNENGDWLGNETDPLIGFSWKGGSERHTTGILMY 379
           +E+R EN +    E D   G+SW    +RHTT +L++
Sbjct: 11  SEEREENEE----ENDEDTGYSWAKTKQRHTTDVLLH 43


>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
           acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
           GI:8515709
          Length = 675

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +2

Query: 335 WKGGSERHTTGILMYPEPFITTTAAGEKVAVL-LMDTQGTFDSSSTVRDCSIIFALSTLY 511
           W GG+  H T  +++ +  I  T  G    +  + D  G+   +  + DC     L+ + 
Sbjct: 226 WIGGAANHATHTIVFSQLHINGTNQGVHAFIAQIRDQDGSICPNIRIADCGHKIGLNGVD 285

Query: 512 RPFRSIISKRIFKRTIFNTYSYLPSTGNYLKN-EDGSKAFQMLM 640
                  + RI +  + N  + + S G Y+ + +D  + F   M
Sbjct: 286 NGRIWFDNLRIPRENLLNAVADVSSDGKYVSSIKDPDQRFGAFM 329


>At3g63410.1 68416.m07139 chloroplast inner envelope membrane
           protein, putative (APG1) similar to SP|P23525 37 kDa
           inner envelope membrane protein, chloroplast precursor
           (E37) {Spinacia oleracea}; contains Pfam profile
           PF01209: methlytransferase, UbiE/COQ5 family
          Length = 338

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 348 DPPFQLNPIKGSVSFPNQSPFSF--RFSVGEL 259
           D P QL P +  V  P  +PFSF  RF +G L
Sbjct: 282 DSPLQLGPKEEDVEKPVNNPFSFLGRFLLGTL 313


>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 374 MYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTV 472
           +Y    +TT  AG+ V +L   T  TFDSS  V
Sbjct: 467 LYGPALVTTKDAGDAVTLLQSLTGSTFDSSQLV 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,712
Number of Sequences: 28952
Number of extensions: 341958
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)