Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00377
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.13 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.51 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   4.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.4  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   8.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   8.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.4  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   8.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.4  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 128 LITPKGENNSVFQLTEQFLTEDYANNGIEL----NNRFGDDASEKIPSRTSANFQNLKLQ 295
           L  P   N +V  L+  F +    NN + L    N    D  S  +PS TS +     + 
Sbjct: 294 LSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVP 353

Query: 296 LNYPRTLNSH 325
            N P TLNS+
Sbjct: 354 SNSPATLNSY 363


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 31/118 (26%), Positives = 53/118 (44%)
 Frame = +1

Query: 265 LSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVNLN 444
           L +LP+ +   QL    E  L     + ++  LL      PEN L+  + T  F R++L+
Sbjct: 412 LLRLPDSQTFVQLYSSTESDLL---KEGLSRILLYFFTYFPENILKLKIDTSIFLRLDLS 468

Query: 445 PQLFNYCYSVALMHRRDTRKVKLRILQKYFPLNSWIPKYSLKLVKPQLLFHQTFHAYL 618
           P + +  +S   +H  +     ++IL +Y P   W        V   L++ QT H+ L
Sbjct: 469 PGMLDRPFS--RLHVENI----IQIL-RYLPEVKWFDVVRSPFVFLCLMYLQTSHSKL 519


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 280 EFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 408
           E+++   LP+D   SL++   Q+   +  G+L  V   +++++
Sbjct: 163 EYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEI 205


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 131  ITPKGENNSVFQLTEQFLTEDYANNGIE 214
            +TP     +++ L+E FLT++   NG+E
Sbjct: 949  MTPSNGLRNIYPLSETFLTKEAIANGLE 976


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 206 GIELNNRFGDDASEKIPSRTSANF-QNLKLQLNY--PRTLNSHYFYLNIKKWQMN 361
           GIE N  F    S K  S TS+N   NL L LNY  P T++   F L   +++++
Sbjct: 80  GIEKNPSFSTTKSAKSFSSTSSNIDSNLDL-LNYDTPLTISKISFLLQQLEFKLS 133


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 280 EFKIATQLPKDAEFSLFLPKHQE 348
           E   A+    D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 629 WNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGKYFCKILNLTF 501
           W D  Y+  + W N+    S+S  L +   +  + C I++  F
Sbjct: 532 WKDEAYSLGMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDF 574


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -3

Query: 566 SEYLGIQEFRGKYFCK----ILNLTFLVSRLCI 480
           SE+LG +  R  + C+    +LNLT   S+LCI
Sbjct: 162 SEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCI 194


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 113 RPNEPLITPKGENNSVFQLTEQFLTEDYANNGIE--LNNRFGDDASEKIPSRTS 268
           +P  P+     +    F+   + L ++   NGIE  +N      AS+ +P+ T+
Sbjct: 146 KPTNPITIIDNDKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPNSTN 199


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +1

Query: 247 EDTLKNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAF 426
           + TL+   ++   K+   L  ++E +LFL  +  + N+L  +L    + + Q+  + C F
Sbjct: 389 QTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNIL----KVDFQNGHNICTF 444

Query: 427 ARVNLNPQL 453
           A+  +N  L
Sbjct: 445 AKWCINNNL 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,603
Number of Sequences: 5004
Number of extensions: 62922
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)