Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00377
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           33   0.31 
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.8  
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    28   6.6  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 116 PNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPSRTSANFQNLKLQ 295
           P++ ++  K +NN    L    +  + ANN   L+ RF +DA+  IP+R  ++      Q
Sbjct: 481 PSKVVLPKKSKNNQRRNLVTTAVKCEEANND-PLSRRFSEDANRNIPTRNLSDKTKNNAQ 539

Query: 296 LNYP 307
            N P
Sbjct: 540 SNRP 543


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 190 LSQKLFCELKHRIV-FALGCDERLIWTIE 107
           L  +L+CEL   +V +A  C+ER +W IE
Sbjct: 311 LRSRLYCELDDWLVSWADACEERSVWRIE 339


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 418 CAFARVNLNPQLFNYCYSVALMHRRDTRKVKLRILQKYFPLNSW 549
           C+   + L   +F   + +A  H   T +  LRIL  Y+ L SW
Sbjct: 379 CSIFLLELLLVIFQVPFQMAKKHFLGTNRYPLRILPSYYFLKSW 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,617
Number of Sequences: 37544
Number of extensions: 373483
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)