Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00377
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   5.1  
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)                   29   5.1  
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   8.9  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 110  DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPSRTSANFQ 280
            D P   L++P    N+ +        + Y NN  +      D+AS KIP++T AN Q
Sbjct: 1244 DHPTR-LLSPNAHGNTGYDQGSSITNKSYQNNP-KRTQEVHDEASIKIPTKTFANGQ 1298


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +2

Query: 140 KGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPSRTSANFQNLKLQLNYPRTLN 319
           K   N   + TE + T+   NN  +    +   A+EK  ++ + NF + K   NY     
Sbjct: 164 KATENYSTKATENYSTKSKENNSTKATENYSTKATEKYSTKATENF-STKATENYSTKAT 222

Query: 320 SHY 328
             Y
Sbjct: 223 EKY 225


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 361 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 507
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
          Length = 558

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 260 RTSANFQNLKLQLNYPRTLNSHYFYLNIKKWQMNFLAFSWMYQRTNYK 403
           R SAN+   +   + PR L S     + KKWQ   +   W  Q  + K
Sbjct: 347 RHSANYNLRQADFSLPRELGSGKAKKDAKKWQRRAIKHDWRKQCEHLK 394


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 511 LRILQKYFPLNSWIPKYSLK 570
           L  L+K FP+  W+PKY+ +
Sbjct: 66  LETLEKLFPIVQWLPKYNFR 85


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 322 SLFLPKHQEMANELLGVLMDVPENELQDLLS 414
           ++F    QE  NEL   L D+P   L DLL+
Sbjct: 164 TIFKSSKQEQVNELSEALSDIPSEVLFDLLN 194


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 155 SVFQLTEQFLTEDYANNGIELNNRFGDD 238
           S +Q+T QF++ +Y N    L   FGDD
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDD 153


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 382 VPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVKLRILQKYF 534
           V +  L  + ST    R+N  PQ  ++ Y  + + RR T  +  R+   Y+
Sbjct: 568 VDDTRLFHVSSTNGIYRINTEPQRDHWFYQFSFLARRTTGNLNERMFYVYY 618


>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 499 RKVKLRILQKY----FPLNSWIPKYSLKLVKPQLL 591
           RK+ L  ++KY    FP+  W+ KY+L  ++  L+
Sbjct: 369 RKIDLEAIKKYTKKRFPIAKWLSKYNLHFLQCDLI 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,337,454
Number of Sequences: 59808
Number of extensions: 444664
Number of successful extensions: 1108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)