Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00377
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein.               30   7.4  
DQ871600-1|ABI49507.1|  496|Homo sapiens DCLRE1A protein.              30   7.4  
BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1...    30   7.4  
AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1...    30   7.4  
AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1...    30   7.4  
BC142620-1|AAI42621.1|  546|Homo sapiens TBX4 protein protein.         30   9.8  
BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1...    30   9.8  

>D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein.
          Length = 1044

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 528 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEGI 587

Query: 436 NLNP 447
           NLNP
Sbjct: 588 NLNP 591


>DQ871600-1|ABI49507.1|  496|Homo sapiens DCLRE1A protein.
          Length = 496

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 332 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEGI 391

Query: 436 NLNP 447
           NLNP
Sbjct: 392 NLNP 395


>BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1A
           (PSO2 homolog, S. cerevisiae) protein.
          Length = 1040

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 524 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEGI 583

Query: 436 NLNP 447
           NLNP
Sbjct: 584 NLNP 587


>AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1A
           (PSO2 homolog, S. cerevisiae) protein.
          Length = 1040

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 524 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEGI 583

Query: 436 NLNP 447
           NLNP
Sbjct: 584 NLNP 587


>AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1A
           (PSO2 homolog, S. cerevisiae) protein.
          Length = 1040

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 524 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEGI 583

Query: 436 NLNP 447
           NLNP
Sbjct: 584 NLNP 587


>BC142620-1|AAI42621.1|  546|Homo sapiens TBX4 protein protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 584 SCYSTRRSTHTYYHSTRLHCDGLRRRTPPCVLARRYRHQPASL 712
           S + T+R +  +YH  +   DG R    PC   R Y   P+S+
Sbjct: 322 STFPTQRDSSLFYHCLKRRADGTRHLDLPC--KRSYLEAPSSV 362


>BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1A
           (PSO2 homolog, S. cerevisiae) protein.
          Length = 1040

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 259 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQD-LLSTCAFARV 435
           +NLS  P  K    LP   +++   P  + M    +GV   +P    ++ LL   A   +
Sbjct: 524 ENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLPPKRKEEKLLGESALEWI 583

Query: 436 NLNP 447
           NLNP
Sbjct: 584 NLNP 587


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,940,493
Number of Sequences: 237096
Number of extensions: 2003654
Number of successful extensions: 7635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7635
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)