Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00375
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 75 9e-15
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 33 0.045
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 30 0.32
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.9
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 6.9
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 74.9 bits (176), Expect = 9e-15
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Frame = +2
Query: 278 AQTVDEALAILS-----DKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 442
A+ +D+AL +LS K ++DRHPE+R KAA T ++Q LP L+ E P LRL+Q +++
Sbjct: 104 ARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTEYKQSRLPELRKEQPGLRLNQYEDI 163
Query: 443 LKKEWHKSPQNPLNQ 487
+ KE+ K P NP N+
Sbjct: 164 MYKEFQKHPDNPFNK 178
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 32.7 bits (71), Expect = 0.045
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 329 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 457
D + KR +AF F N ++K +NP QL LL K W
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRW 54
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 362 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWH 460
F F I P+LKAE +L+ LK+ L+ W+
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWN 234
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +2
Query: 266 DGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 445
+ E + ++ A+ + + R E RL+ EQ R K E PS ++S+L +
Sbjct: 113 ENERDRLQEKLRALQEESANLRRQRENRLRE-----EQEQSKRRKQETPSSKISELDRSI 167
Query: 446 KKEWHKSPQNPLN 484
+ W + + +N
Sbjct: 168 RIRWKRKYADQVN 180
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 403 REPFAQAFSAQRTAKERMAQITTEPP 480
R PF A SAQ A R + ++T PP
Sbjct: 884 RSPFPGASSAQPAAMSRTSSVSTLPP 909
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 153 QISQAKEKMAKPETAKPVPS--KVVIEEPPLEENLNGYS*MVN*HRLLMKLSRYSVIS 320
+I Q K + P P PS K+ IE+PP +L +N L MKL + IS
Sbjct: 438 EIVQLGSKASVPMILFPAPSNYKLTIEKPPFPCDLTIPHTAINDSWLPMKLKETNAIS 495
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 360 PSQPLNKSICHVLKPRTLRSGFLSSKNC*RKNGTNHHRT-PSIKGSELMRL 509
P++P+ ++ CH P + + +SKN + TN ++ PSI SE R+
Sbjct: 142 PNEPVPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPSIAWSEGHRI 192
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 6.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 251 KRI-QLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLS 427
KRI L ++ + DEA+ L ++ P K + F + IN AE +LR+
Sbjct: 1045 KRIYSLSADMVKACDEAVERLGADDTKNKQPRKAILIEFKGVKNIN-----AETVTLRVK 1099
Query: 428 QLKEL 442
L L
Sbjct: 1100 DLTHL 1104
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 230 TSLRRKSK----RIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRL 397
+SL+RKS+ + D ++ + ++ L D P + R ++ ++ FE+ R+
Sbjct: 163 SSLKRKSQLILENVGTDEKIINISETKMSALCDDPGIGRKSQRFIELEKMLFEEKRAKRI 222
Query: 398 KAENPS 415
K + S
Sbjct: 223 KKQGAS 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,838
Number of Sequences: 5004
Number of extensions: 36079
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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