Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00375
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 80 1e-15
03_01_0226 + 1795120-1795686,1796040-1796171 72 3e-13
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 30 1.3
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 29 3.1
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601... 29 3.1
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 28 5.4
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 28 7.1
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 28 7.1
12_01_0136 + 1051853-1052245,1052352-1052807 27 9.4
11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104 27 9.4
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 5/75 (6%)
Frame = +2
Query: 278 AQTVDEALAILS--DKP---EVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 442
A++VDEA+A +S D D+HPE+RLKA+F AFE+ LP+LK E P L L+Q K++
Sbjct: 157 ARSVDEAIARMSLVDSEGALPADKHPERRLKASFKAFEEAELPKLKEEKPGLTLNQYKDM 216
Query: 443 LKKEWHKSPQNPLNQ 487
+ K W KSP NPLNQ
Sbjct: 217 IWKLWKKSPDNPLNQ 231
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Frame = +2
Query: 278 AQTVDEALAILSDKPEV----DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 445
A++V++A+ +S E DRHPE+RLK ++ AFE+ L +LK E P L L Q K+++
Sbjct: 156 ARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKDMI 215
Query: 446 KKEWHKSPQNPLNQ 487
K W KSP NPLNQ
Sbjct: 216 WKLWKKSPDNPLNQ 229
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 317 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
K + D + KR A F F + LK NP L +++ + L + W K
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQK 598
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 326 VDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
++R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 185 INRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 234
>03_02_0157 +
6008840-6008908,6009795-6009932,6010921-6011014,
6011313-6011361,6015190-6015265,6015466-6015558,
6015786-6015851
Length = 194
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 320 PEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
P V + PEK RL +A+ F + + R+KA P + + + K W K
Sbjct: 96 PFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 145
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 320 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
P +R EKR + +A+ F + + R+KA NP + + K W P
Sbjct: 160 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFP 211
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 332 RHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 113 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYP 160
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 329 DRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
+R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 158 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206
>12_01_0136 + 1051853-1052245,1052352-1052807
Length = 282
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 254 RIQLDGE-LAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL-RLS 427
R + D E LA+ +DEA +L + + HPEK ++ A P + L +L
Sbjct: 100 RTRRDAEALARAMDEAGVVLLFRDKAYLHPEKVVELVRRAVPLALSPENDSRKEELKKLQ 159
Query: 428 QLKELLKKEWHK 463
+ KE + K HK
Sbjct: 160 EKKEEIDKLAHK 171
>11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104
Length = 310
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 254 RIQLDGE-LAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL-RLS 427
R + D E LA+ +DEA +L + + HPEK ++ A P + L +L
Sbjct: 101 RTRRDAEALARAMDEAGVVLLFRDKAYLHPEKVVELVRRAVPLALSPENDSRKEELKKLQ 160
Query: 428 QLKELLKKEWHK 463
+ KE + K HK
Sbjct: 161 EKKEEIDKLAHK 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,547,059
Number of Sequences: 37544
Number of extensions: 208962
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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