Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00375
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)               101   6e-22
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)                33   0.19 
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               32   0.45 
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               32   0.45 
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               30   1.8  
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)                 29   2.4  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                28   7.2  
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)                 27   9.6  
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)                27   9.6  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             27   9.6  

>SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)
          Length = 170

 Score =  101 bits (241), Expect = 6e-22
 Identities = 44/83 (53%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
 Frame = +2

Query: 239 RRKSKRIQLDGEL-AQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPS 415
           ++ ++ ++ +G + A++V+EA+A LS + ++++HPEKRLKAA+  FE+  LPRLK ENP+
Sbjct: 78  QKMAELLEAEGAVEARSVEEAIATLSVEQKIEKHPEKRLKAAYAEFEERELPRLKQENPN 137

Query: 416 LRLSQLKELLKKEWHKSPQNPLN 484
           LRLSQLK++L+K+W KSP+NPLN
Sbjct: 138 LRLSQLKQMLRKDWMKSPENPLN 160


>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 263 LDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 442
           L G +   VD   A    K + D    KR   AF  + QI   ++  E+P +  +++ + 
Sbjct: 19  LSGGMDDQVDATQATHESKKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKR 78

Query: 443 LKKEW 457
           L K W
Sbjct: 79  LGKRW 83


>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
          Length = 265

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 13/39 (33%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +2

Query: 239 RRKSKRIQLDGEL-AQTVDEALAILSDKPEVDRHPEKRL 352
           ++ ++ ++ +G + A++V+EA+A LS + ++++HPEKR+
Sbjct: 147 QKMAELLEAEGAVEARSVEEAIATLSVEQKIEKHPEKRV 185


>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 233 SLRRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEK--RLKAAFTAFEQINLPRLKAE 406
           S+R+ S +I     L    D+    +S    +D  P+K  R   AF  F Q    ++K E
Sbjct: 270 SIRQLSTQISRTSVLFP--DKLARCISTSSALDAAPKKHKRPTPAFFRFRQDYADKVKEE 327

Query: 407 NPSLRLSQLKELLKKEW 457
           NP L+ +++++ L  +W
Sbjct: 328 NPHLKDAEIRKHLSDQW 344


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 344 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
           KR   AF  +      +L AENP L  SQ+ ++L  EW K
Sbjct: 8   KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 344 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
           KR   AF  +      +L AENP L  SQ+ ++L  EW K
Sbjct: 8   KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 344 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQN 475
           KR   +F  + +     +  ENP +R +++ ++L  EW K P++
Sbjct: 11  KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPES 54


>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +3

Query: 153 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENL 251
           Q++Q+++ MA+P +A+P P K+  ++  LE+ +
Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQV 383


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 317 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
           KP VD +  K    ++  + Q +  +L  + P+L+ ++L   L K+W K
Sbjct: 144 KPFVDPNQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRK 192


>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
          Length = 200

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +2

Query: 233 SLRRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENP 412
           S  RKSK++ L  ++   +       +D+P+     + + K  F+ + + N  +++ ENP
Sbjct: 6   SKARKSKQMTLQSKVNNQIK------ADRPDEKADRQTKKKNGFSLWLEENRDQIEEENP 59

Query: 413 SLRLSQLKELLKKEW 457
            +    + ++  K W
Sbjct: 60  DIPDEDVVKIAMKTW 74


>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
          Length = 406

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +2

Query: 233 SLRRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENP 412
           S  RKSK++ L  ++   +       +D+P+     + + K  F+ + + N  +++ ENP
Sbjct: 299 SKARKSKQMTLQSKVNNQIK------ADRPDEKADRQTKKKNGFSLWLEENRDQIEEENP 352

Query: 413 SLRLSQLKELLKKEW 457
            +    + ++  K W
Sbjct: 353 DIPDEDVVKIAMKTW 367


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 AQISQAKEKMAKPETAKPVPSKVVIEEPPLEEN 248
           + I    ++ A+P  A+P PS  +IE PP EE+
Sbjct: 298 SNIDLLMDETAQP--AQPQPSPTIIESPPAEES 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,461
Number of Sequences: 59808
Number of extensions: 252741
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)