Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00375
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 95 5e-20
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 95 5e-20
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 36 0.032
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 36 0.032
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 36 0.032
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 34 0.074
Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical pr... 30 1.6
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 30 1.6
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z82069-2|CAB04904.1| 315|Caenorhabditis elegans Hypothetical pr... 27 8.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 27 8.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 8.4
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 27 8.4
>AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical
protein Y73E7A.1b protein.
Length = 146
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/78 (55%), Positives = 61/78 (78%), Gaps = 2/78 (2%)
Frame = +2
Query: 266 DGELAQTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKE 439
+GE A+ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK +P+ RLSQLK+
Sbjct: 65 EGE-ARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQ 123
Query: 440 LLKKEWHKSPQNPLNQRV 493
+LKKEW KSP+NPLN R+
Sbjct: 124 ILKKEWQKSPENPLNARL 141
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/78 (55%), Positives = 61/78 (78%), Gaps = 2/78 (2%)
Frame = +2
Query: 266 DGELAQTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKE 439
+GE A+ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK +P+ RLSQLK+
Sbjct: 142 EGE-ARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQ 200
Query: 440 LLKKEWHKSPQNPLNQRV 493
+LKKEW KSP+NPLN R+
Sbjct: 201 ILKKEWQKSPENPLNARL 218
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +2
Query: 239 RRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 418
++ ++R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 100 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 159
Query: 419 RLSQLKELLKKEWHKSPQ 472
++ Q+ + L K W PQ
Sbjct: 160 KVGQVAQELGKMWKLVPQ 177
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +2
Query: 239 RRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 418
++ ++R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160
Query: 419 RLSQLKELLKKEWHKSPQ 472
++ Q+ + L K W PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +2
Query: 239 RRKSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 418
++ ++R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160
Query: 419 RLSQLKELLKKEWHKSPQ 472
++ Q+ + L K W PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 34.3 bits (75), Expect = 0.074
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 329 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 472
D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ
Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176
>Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical
protein C17D12.7 protein.
Length = 657
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 242 RKSKRIQLDGELAQTVDEALAILSDKPEV--DRHPEKRLKAAFTAFEQ 379
+KSK+ ++ + +T D L+ILS+K E+ ++H K A A E+
Sbjct: 62 KKSKKKKIPSPIKKTNDTKLSILSEKSEIRSEKHKNKCKSADLDAMEK 109
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
T23F2.2b protein.
Length = 1538
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 245 KSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRL 424
K+K +QL +L + E S+KP D P K L+ + ++F N K+EN + R
Sbjct: 1132 KNKNVQLSKDLQVAMAELNVYKSEKPHKDDEP-KNLERS-SSFSSFN--HNKSENDTQRW 1187
Query: 425 SQLKELLKKEWHKSPQN 475
+ L +E ++ QN
Sbjct: 1188 KEKSGTLFREVNRIRQN 1204
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
T23F2.2a protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 245 KSKRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRL 424
K+K +QL +L + E S+KP D P K L+ + ++F N K+EN + R
Sbjct: 1132 KNKNVQLSKDLQVAMAELNVYKSEKPHKDDEP-KNLERS-SSFSSFN--HNKSENDTQRW 1187
Query: 425 SQLKELLKKEWHKSPQN 475
+ L +E ++ QN
Sbjct: 1188 KEKSGTLFREVNRIRQN 1204
>Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical
protein ZK262.9 protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 168 KEKMAKPETAKPVPSKVVIEEPPL 239
+EK A ET +P P+ +++ PP+
Sbjct: 3 REKAASVETIRPTPANSIVKAPPV 26
>Z82069-2|CAB04904.1| 315|Caenorhabditis elegans Hypothetical
protein W04A8.3 protein.
Length = 315
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 293 EALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLK 448
EAL I S + +++ E R F E ++LPRLK ++ + LK +LK
Sbjct: 111 EALFINSHRKDIE--VELRQLLNFLKTEALHLPRLKFKHEHISSKLLKRILK 160
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 293 EALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 445
E+ +S++PEVD + + + K A E+ NL L E PS S +++
Sbjct: 6165 ESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEPSSSASDQLDVI 6215
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 293 EALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 445
E+ +S++PEVD + + + K A E+ NL L E PS S +++
Sbjct: 6165 ESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEPSSSASDQLDVI 6215
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 293 EALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 445
E+ +S++PEVD + + + K A E+ NL L E PS S +++
Sbjct: 40 ESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEPSSSASDQLDVI 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,340
Number of Sequences: 27780
Number of extensions: 193465
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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