Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00375
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    93   2e-19
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ...    36   0.022
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor...    32   0.36 
At2g26580.2 68415.m03189 plant-specific transcription factor YAB...    31   0.84 
At2g26580.1 68415.m03188 plant-specific transcription factor YAB...    31   0.84 
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic...    30   1.1  
At3g28730.1 68416.m03587 structure-specific recognition protein ...    30   1.5  
At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) i...    30   1.5  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    29   2.6  

>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
 Frame = +2

Query: 278 AQTVDEALA--ILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKK 451
           A TVDEALA   +SD   VDRHPEKRLKA+F A+E++ LPRLK+E P L  +Q K+L+ K
Sbjct: 155 AHTVDEALARITVSDNLPVDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWK 214

Query: 452 EWHKSPQNPLNQ 487
            W KSP NPLNQ
Sbjct: 215 MWKKSPDNPLNQ 226


>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
           INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
          Length = 231

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 326 VDRHPEKRLKA--AFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
           V++ PEKR +A  A+  F +  + RLKA+NPS+   +   L  K W   P
Sbjct: 128 VNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFP 177


>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
           floral organs protein (AFO) / filamentous flower protein
           (FIL) identical to YABBY1 [Arabidopsis thaliana]
           GI:4928749, abnormal floral organs protein (AFO)
           [Arabidopsis thaliana] GI:4322477; supporting cDNA
           gi|4322476|gb|AF087015.1|AF087015
          Length = 229

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 320 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
           P V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 132 PPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183


>At2g26580.2 68415.m03189 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 308 LSDKPEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
           ++++  V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 92  ITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>At2g26580.1 68415.m03188 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 308 LSDKPEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
           ++++  V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 92  ITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
           to YABBY3 [Arabidopsis thaliana] GI:4928753
          Length = 240

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 320 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 469
           P  +R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 144 PPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 195


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 317 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 463
           K + D +  KR  + F  F Q+    +K E+P +   ++ ++L  +W +
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQ 602


>At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW)
           identical to transcription factor CRC (CRABS CLAW)
           GI:4836698 [Arabidopsis thaliana]
          Length = 181

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 320 PEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK-SPQNP 478
           P V + PEK  RL +A+  F +  + R+K+ NP +   +      K W K  P +P
Sbjct: 106 PFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSP 161


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 257 IQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPS 415
           I+L  EL+     A   L  KP   RHPE +  A+FT +   ++  L   NPS
Sbjct: 60  IKLTRELSVPTSTAGKALYGKPVKFRHPETKSPASFTTYFSFSVTNL---NPS 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,308
Number of Sequences: 28952
Number of extensions: 182199
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)