Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00374X
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    29   0.69 
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    28   1.2  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.1  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   3.7  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.9  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   8.5  
SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    25   8.5  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 55  DAVSGIGTDEEAIIEILCTHSNYGIRTISAFYEQLYGKSLESD 183
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 41  LRSSTMLSQELEPT-KKPSSRSCARIPTMVSVPYPHFTNNCTARA 172
           L  +T L++ L P  + P+    ARI  M  V Y   T NC A A
Sbjct: 163 LTLATELAERLLPAFRTPTGIPFARINLMKGVAYREVTENCAAAA 207


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 318 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 440
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +1

Query: 124 GIRTISAFYEQLYGKSLESDLKGDTSGH-----FKRLCVSLCMANRDENRASM--KAQLK 282
           G   + A  E L  + L  +L+GD +       FK +C++  +  +++   S+  K+ +K
Sbjct: 335 GFEEVEARLELLCREELLYNLEGDFTFSKADLTFKEICLAFVLMEKEKELISVPSKSDIK 394

Query: 283 PMLKHWPPLVKV 318
           P  KH+  L+K+
Sbjct: 395 P--KHYRKLLKI 404


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 135 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHGQSR*KQGID 266
           H++ ++  V QE G  L R          LQE+VRVV+H   R  + +D
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHENGRVTRLVD 373


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 144  ILRTTVRQEPGIGLKRRHVG 203
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 363 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSI 461
           + Y +  ++  +YE   G  I+D I+  F G +
Sbjct: 5   KPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGL 37


>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 41  LRSSTMLSQELEPTKKPSSRSCARIPTMVSVPYPHFTN 154
           L  S +L+    P+  P+S +   I  +VS   P F N
Sbjct: 53  LTFSNLLNANTSPSSSPTSMAFMGIAALVSTYLPQFLN 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,472
Number of Sequences: 5004
Number of extensions: 49770
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)