Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00374X
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  PRCCLRNWNRRRSHHRDPVHAFQLWYPYHI 140
           P CC + W+ ++S  R  +++  L YP  I
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSI 392


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 129 PYHIRILRTTVRQEPGIGLKRRHVGTLQEIVRVVVHGQ 242
           PY   +L++T  + P I L+      L  +V  + HG+
Sbjct: 55  PYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 544 HRHQRQDAHPHRG 582
           H+H     HPHRG
Sbjct: 319 HQHHPSQYHPHRG 331


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -1

Query: 312 HQRRPVLQHRL*LSLHRCPVFIAIGHAQRH 223
           H   P  QH   L+    P  I IGH   H
Sbjct: 436 HAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 258 PVFIAIGHAQRHA 220
           P F  +GH QRH+
Sbjct: 186 PQFRVLGHRQRHS 198


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 243 IGHAQRHAQSLEVSRR 196
           +GHA    QSL+ SRR
Sbjct: 371 LGHATNLIQSLDSSRR 386


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +1

Query: 232 CMANRDENRASMKAQLKPMLKHWPPLVKVNGEPTNQSSTPSLSLAPISS 378
           C    D+  A   A+LK   +  PP ++           PS+ L  ++S
Sbjct: 370 CFVRNDQESAQATAELKLGGRFEPPQIRQAFAEETLQPGPSMFLKCVAS 418


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 243 IGHAQRHAQSLEVSRR 196
           +GHA    QSL+ SRR
Sbjct: 339 LGHATNLIQSLDSSRR 354


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 520 APVLLDEGHRHQRQDAHPH 576
           +P L++    HQ    HPH
Sbjct: 160 SPPLVESQMHHQMHTQHPH 178


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 419 FSGQSFVLGEDLSQLLIGASDKDGV 345
           F G+  + G+DL    I A D +GV
Sbjct: 288 FFGEKALQGDDLRTANIIADDPEGV 312


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 244  RDENRASMKAQLKPMLKHWPPLVKVNGEPTNQSS 345
            + + +   + Q +  L H+P L  +   PT++ S
Sbjct: 1452 QQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKS 1485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,049
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)