Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00373
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   5.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   9.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   9.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   9.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   9.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 616 NASTHFW*SQTG 581
           NA THFW + TG
Sbjct: 237 NAGTHFWHAHTG 248


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 616 NASTHFW*SQTG 581
           NA THFW + TG
Sbjct: 237 NAGTHFWHAHTG 248


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 616 NASTHFW*SQTGTDTSMST 560
           N+ THFW S +G   S  T
Sbjct: 171 NSGTHFWHSHSGFQRSDGT 189


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 367 EKIQHPNFELSSYHNDIAILKLHRPAVFNTYVWPICLPPADLD 495
           +K+ HP  +   YHN+       R   ++T +  +  P  + D
Sbjct: 40  DKLHHPIHQTVIYHNNPRDPNRARSVSYSTVIQSVPHPETEKD 82


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 58  RSGSRKISSQSLYAFFNF 5
           R+  R +SS S+YA+F F
Sbjct: 75  RTTFRWLSSTSIYAYFIF 92


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 58  RSGSRKISSQSLYAFFNF 5
           R+  R +SS S+YA+F F
Sbjct: 75  RTTFRWLSSTSIYAYFIF 92


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = +3

Query: 537 WYGGPHSNVLMEVSVPVWDHQ 599
           WY G H    M     +W+ Q
Sbjct: 28  WYAGYHQGAQMGPEQQMWEPQ 48


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = +3

Query: 537 WYGGPHSNVLMEVSVPVWDHQ 599
           WY G H    M     +W+ Q
Sbjct: 28  WYAGYHQGAQMGPEQQMWEPQ 48


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 80  RSTPPLSTPSN 90


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 249 CRSVMRTPPQYCSNPYGVIDAIHG 178
           C S  +  PQY  +PY      HG
Sbjct: 42  CYSPPQVAPQYPQHPYAAPAPGHG 65



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 551 RTTVPLSSPSN 519
           R+T PLS+PSN
Sbjct: 124 RSTPPLSTPSN 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,051
Number of Sequences: 336
Number of extensions: 3562
Number of successful extensions: 25
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)