Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00373
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 27 2.5
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 26 4.4
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 4.4
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 4.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.4
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 5.8
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 5.8
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 25 7.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.7
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 221 CGGVLITDRHV*RPRIVQEDGTPTNYTYDLVNTTCSALTTPALTILKWW 367
C VL+ + P+ +D TP D +N TC P L +L WW
Sbjct: 457 CAFVLLMVPILCFPQFRGKDNTP-----DAMNWTCVVFGGPMLMVLIWW 500
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 91 YFQQDFVIFVLRSGSRKISSQ 29
YF D+V +L SG KISSQ
Sbjct: 824 YFAADWVAALLNSGKTKISSQ 844
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 319 DLQRTNDSRSYNFKVVEKIQHPNFELS-SYHNDIAILKLHRPAVFNTYVWPICL 477
++++TNDS + VEK +P F + SY+ R N W C+
Sbjct: 15 EVRKTNDSSILSKASVEKCGYPGFTVGHSYYQPFIQKSPRRSPSVNRGYWTRCM 68
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 409 NDIAILKLHRPAVFNTYVWPICLPPADLDLTNETLQSLDGE-LSGTVVLTATCSWKC 576
+DI I L + + + LD+T++ L S DGE L + + ++ SW+C
Sbjct: 398 SDIFIWDLRKSELVQKIPLQTKVAAVSLDITSQLLVSSDGETLYVHIYVKSSKSWRC 454
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 374 SSILTSSCRAIITTSPF*SSTGQLCLIHTFGQFVYRLQIWILLMKRYSHWMGNSVVRWSS 553
S+ TSS + I TSP SS+ + I T + + ++ + + N+ + +S
Sbjct: 348 SATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSLASIISNAYIA-TS 406
Query: 554 QQRAHGSVGTCLGSP 598
+ + V T L SP
Sbjct: 407 KSGLNSGVSTLLASP 421
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 361 VVEKIQHPNFELSSYHNDIAIL 426
V K+QHP+FE S++ + ++
Sbjct: 61 VFSKLQHPSFERSAFFTSVGLI 82
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 259 AAHCTRRWDADELYVRLGEYDLQRTNDSRSYNFKVVEKIQHPNFEL 396
A HCT D++ + Q+T+ +SYN +++ H +F +
Sbjct: 119 ATHCTWERTVDQIEAN----EKQKTDFEKSYNINIIDTPGHIDFTI 160
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 291 VGVPSSCTMRGRYTCRSVMRTPPQYCSN 208
+GVPS C + + ++++ PQYC+N
Sbjct: 524 LGVPSQCAIS-----KHILQSKPQYCAN 546
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 276 SCTMRGRYTCRSVMRTPPQYCSNPYGV-IDAIHGHSRGLAGLDPVILP 136
+ T R Y S PQ S YGV I A H H+ L L+PV+ P
Sbjct: 33 NATSRSFYCPLSPYMDSPQ--SIGYGVTISAPHMHATALQELEPVLQP 78
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 243 SVMRTPPQYCSNPYGVIDAIHGHSRGLAGLD 151
+++ P + P+ D ++ SRGL G D
Sbjct: 965 TILEEDPPFVPKPFSPEDTVYFDSRGLKGFD 995
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,076
Number of Sequences: 5004
Number of extensions: 59380
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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