Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00373
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    34   0.091
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    30   2.0  
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508...    29   4.5  
12_01_0541 + 4251931-4254141                                           28   6.0  
04_04_0517 + 25841292-25842099,25842256-25842308                       28   6.0  

>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 650 SADGFGEHGIDERIYAFLVIPNRYRHFHEHV---AVRTTVPLSSPSNDCSVSLVRSKSA 483
           S DG G +G+D+   +F V  +R RH  E +    +   + L   SN CS  + R+ ++
Sbjct: 270 STDGVGSNGVDKNHCSFSVPEDRLRHRDERMHSFQINNNIDLIIESNSCSSDVFRASNS 328


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 184  DGVDHAIRIRTVLRWGPHH*STRVTAAHCTRRWDADEL-YVRLGEYDLQR 330
            DGV +  +++  LR  P   + R  A  CTR WD  E  Y+ +GE  + R
Sbjct: 2026 DGVRYVFQLQ--LREVPTDAAARDVALDCTRPWDEAEFPYIDVGEVSIGR 2073


>05_01_0573 -
           5083030-5083151,5084639-5084738,5084790-5084829,
           5085122-5085567
          Length = 235

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 521 WMGNSVVRWSSQQRAHGSVGTC 586
           W G S   WSS  R+H S G C
Sbjct: 68  WQGGSTDHWSSVSRSHCSNGCC 89


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 362 WWRRSSILTS----SCRAIITTSPF*SSTGQLCLIHT 460
           WW+   IL      +CRA +T S + +S GQ  L+H+
Sbjct: 421 WWQGHPILEKFLWLTCRATLTRSYWSNSVGQYSLLHS 457


>04_04_0517 + 25841292-25842099,25842256-25842308
          Length = 286

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 436 CGASEWRCRYDSSTARS*DAGSSPP 362
           CGA  W C   S  ARS  A   PP
Sbjct: 198 CGARGWSCTCSSPAARSRSAARRPP 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,832,786
Number of Sequences: 37544
Number of extensions: 438234
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)