Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00373
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   5e-06
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +1

Query: 253 VTAAHCTRRWDADELYVRLGEYDLQRTNDSRSYNFKVVEK-IQHPNFELSSYH----NDI 417
           +TAAHC    +  +L + +GE+D     ++ +     + K I HP +++        NDI
Sbjct: 199 LTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDI 258

Query: 418 AILKLHRPAVFNTYVWPICLP 480
           A+LK  +   F   V P CLP
Sbjct: 259 ALLKTEKDIKFGDKVGPACLP 279



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 507 NATVIGWGTQWYGGPHSNVLMEVSVPVWDHQKCVDAFVDSVFTETVCAGGLEGGKDAC 680
           + TV+GWG   + G  S++L + ++ +    +C   +  ++    +CA     GKDAC
Sbjct: 291 DVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECY-KYYGNIMVNAMCA--YAKGKDAC 345


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 620 DERIYAFLVIPNRYR 576
           +ER   F+ IPNRYR
Sbjct: 771 EERGILFMPIPNRYR 785


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,231
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)