Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00373
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29280.1 68414.m03580 WRKY family transcription factor simila...    33   0.13 
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    29   3.8  
At3g07430.1 68416.m00886 YGGT family protein contains Pfam profi...    28   5.0  
At1g09980.1 68414.m01126 expressed protein contains Pfam profile...    28   5.0  
At2g28550.2 68415.m03469 AP2 domain-containing transcription fac...    28   6.6  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    28   6.6  
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    27   8.7  
At5g09950.1 68418.m01150 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At1g29280.1 68414.m03580 WRKY family transcription factor similar
           to DNA binding protein WRKY3 GB:U56834 GI:1432055 from
           [Petroselinum crispum]
          Length = 259

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 250 VSISDEDPTAILFESVWRDRRHPWPFTRISRSGP 149
           V  S +DPT IL  +   +  HPWP T  +R+GP
Sbjct: 111 VERSRDDPTMILI-TYTSEHNHPWPLTSSTRNGP 143


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 455 VLNTAGLWSFRMAMSL**LDSSKLGCWIFSTTLKL*ERESLVRCRS--YSPSRTYNSSAS 282
           +LN  GL +FR A+S+  L++S L  WIF  +L L    ++   +     P R Y  +  
Sbjct: 36  LLNCVGL-NFRPAVSISVLNTSSLCAWIFGLSLYLSASYAVTLSKGTMVFPQRLYLHA-- 92

Query: 281 HLLVQCAAV 255
            LLV C  V
Sbjct: 93  -LLVACCCV 100


>At3g07430.1 68416.m00886 YGGT family protein contains Pfam profile
           PF02325: YGGT family (unknown function)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 311 VNTTCSALTTPALTILKWWRRSSILTSSCRAIIT 412
           ++ + S +TTP L   K   RSS LT S R++ T
Sbjct: 56  ISASASPITTPILQTEKSTARSSTLTGSTRSLAT 89


>At1g09980.1 68414.m01126 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           non-consensus GC donor splice site at exon boundary
           144764
          Length = 802

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 665 AFKSTSADGFGEHGIDERIYAFLVIPNRYRHFHEHVAVRTTVPLSSP 525
           A  STS D +G   ID++  +FL  P R ++  + V +   V  + P
Sbjct: 87  ALDSTSNDSYGVWKIDDKDSSFLTQPFRIKYARQDVRLCMMVSFTMP 133


>At2g28550.2 68415.m03469 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 250 RVTAAHCTRRWDADELYVRLGEYDLQRTNDSRSYNFKVVEKIQHPNFELSSYHNDI 417
           R    H   RW+A     R+G++  ++  D  + N    E +   NFE+SSY N+I
Sbjct: 247 RGVTLHKCGRWEA-----RMGQFLGKKAYDKAAINTNGREAVT--NFEMSSYQNEI 295


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 250 RVTAAHCTRRWDADELYVRLGEYDLQRTNDSRSYNFKVVEKIQHPNFELSSYHNDI 417
           R    H   RW+A     R+G++  ++  D  + N    E +   NFE+SSY N+I
Sbjct: 247 RGVTLHKCGRWEA-----RMGQFLGKKAYDKAAINTNGREAVT--NFEMSSYQNEI 295


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 465 PNVCIKHSWPVELQNGDVVMIAR 397
           P+     SWP+ +QN D+V IA+
Sbjct: 252 PSPIQAQSWPIAMQNRDIVAIAK 274


>At5g09950.1 68418.m01150 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 995

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 269 VQEDGT-PTNYTYDLVNTTCSALTTPALTILK 361
           +Q DG+ PT YT+  + TT  +LT P + +L+
Sbjct: 197 MQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,318,995
Number of Sequences: 28952
Number of extensions: 327358
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)