Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00372
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.60 
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    26   4.2  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.7  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 2   HVC--PMCERRYSSKAALVTHFKIHLNNN 82
           HVC  P C +R+S    L  H +IH N N
Sbjct: 54  HVCTFPGCAKRFSRSDELTRHARIHTNAN 82


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 214 LIIREIIDRYVKRLLHSTMIHTVIII 291
           L+  EIID ++  + + TM+ ++I++
Sbjct: 210 LVFAEIIDAFISHISYKTMVFSLILV 235


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 637 LLVLKFYFYKINKFTFQ*LMVYFLTLLEFYQ 545
           LLV  FYFY +  F +    ++  T+  F +
Sbjct: 117 LLVSLFYFYSLPNFPYSKTCIFIYTVSSFIE 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,475
Number of Sequences: 5004
Number of extensions: 47445
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)