Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00372
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174...    31   0.62 
07_03_1290 + 25537973-25538962                                         30   1.4  

>11_01_0223 +
           1746203-1746228,1746344-1746463,1746942-1747062,
           1747441-1747572,1748266-1748375,1748465-1748648,
           1749153-1749305,1749672-1749818
          Length = 330

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 2   HVCPMCERRYSSKAALVTHFKIHLNNN 82
           +VCP CERRYSS  AL      H++NN
Sbjct: 162 YVCPNCERRYSSLNAL--DLVSHIDNN 186


>07_03_1290 + 25537973-25538962
          Length = 329

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 412 HYLPTYCNFF--APTYSLVAYYSGYA 341
           H+LP+YC FF  APT    A YSG A
Sbjct: 23  HHLPSYCYFFSSAPTSPTRASYSGEA 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,777
Number of Sequences: 37544
Number of extensions: 240435
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)