Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00372
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ...    29   2.8  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   2.8  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    29   3.6  
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil...    29   3.6  
At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein ...    28   6.4  
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ...    28   6.4  
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    28   6.4  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    27   8.4  

>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 364

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2   HVCPMCERRYSSKAALVTHFK-IHLNNNKVI*IRLKQLLVAVQF*RIVYVIKTTLTV 169
           + C +C+RR+ +   L+ HFK IH   N+    R++Q+  +    R+  V K ++ +
Sbjct: 117 YFCGVCDRRFYTNEKLINHFKQIHETENQK---RMRQIESSKGHRRVRLVAKYSMKI 170


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
 Frame = +1

Query: 238  RYVKRLL----HS--TMIHT-VIIIRKSNLFYFTTLQ*VPSRRNRNSRL 363
            RY K++L    HS   +IH  ++++R S+LFY    Q VP   N  SRL
Sbjct: 1853 RYTKKILVEEGHSIPNLIHIFLLVVRHSDLFYSCRAQFVPQMVNSLSRL 1901


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +1

Query: 238  RYVKRLL----HS--TMIHTV-IIIRKSNLFYFTTLQ*VPSRRNRNSRL 363
            RY K++L    HS   +IH   +I+R S+LFY    Q VP   N  SRL
Sbjct: 1909 RYTKKILVEEGHSIPNLIHIFQLIVRHSDLFYSCRAQFVPQMVNSLSRL 1957


>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
           protein contains Pfam domain, PF00096: Zinc finger, C2H2
           type; contains Pfam domain, PF01428: AN1-like Zinc
           finger
          Length = 279

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 5   VCPMCERRYSSKAALVTHF-KIHLNNNK 85
           VCP C  ++SS  +LV H  K H  N K
Sbjct: 214 VCPQCGAKFSSVTSLVEHVEKTHERNKK 241


>At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein
          contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 142

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 2  HVCPMCERRYSSKAALVTHFKIH 70
          ++C  CER +S+  AL  H  IH
Sbjct: 21 YICEFCERGFSNAQALGGHMNIH 43


>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 286

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   HVCPMCERRYSSKAALVTHFKIH 70
           H C +CE+++SS  A   H +IH
Sbjct: 49  HFCVICEKQFSSGKAYGGHVRIH 71


>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
          contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 5  VCPMCERRYSSKAALVTHFKIHLNNNKV 88
          +C  C + + S  AL  H +IH N N V
Sbjct: 10 LCKYCYKTFPSGKALGGHIRIHTNENSV 37


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 953

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 410 LSTYLL*FFCPYLFTCSLLFRLRLDG 333
           LS YL  F  P +  C+ L+RLRL+G
Sbjct: 441 LSNYLSGFIPPDIGNCTNLYRLRLNG 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,024
Number of Sequences: 28952
Number of extensions: 216387
Number of successful extensions: 376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)