Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00371
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   1.8  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    27   1.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.8  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    27   3.2  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    25   7.5  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    25   7.5  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   9.9  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.9  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = -2

Query: 552  LSKTPVYSRLHAILIKQHIRKLWARRKAYLVSDLCRIIVSAYFASIDSYNLNTRYRMGII 373
            + K  +  + + + +   I KL+  R     S LC ++  AYF ++D  ++ +RY+  +I
Sbjct: 1208 ICKLTIIGKNYTLSVLDQILKLFKGRYTLHDSLLCELL--AYFETLDDISVASRYKGWVI 1265


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 515 IACNRLYTGVFDNFPKLNLWSCAI 586
           IACN   T VF  FPKL + + +I
Sbjct: 172 IACNEGITNVFAKFPKLRMVTASI 195


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 209  YLWIYVALNRKADVFAATKDLPRP--KTFKNSYSRKEII 319
            Y W++  L   ADV A+TK    P  K+ +N+ S  E +
Sbjct: 1085 YTWVHTTLYEYADVEASTKSTSEPSAKSKRNAVSTFETV 1123


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 302 NKNS*KFSVEVDPLLLQTHQLCDSMRRKSISSLQ-RFQE 189
           N+N     +E+   LLQ   L  S  R+++SSLQ RFQE
Sbjct: 61  NQNQEGVIIEIYQELLQKVDLISSELRQNLSSLQLRFQE 99


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 539 GVFDNFPKLNLWSCAIKCIFDFKYWNCVL 625
           G    F K+  +     C+F F YW C L
Sbjct: 110 GQMSQFQKVMSYFPPTACLFSFDYWGCGL 138


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 636 VNNNNTQFQYLKSKMHFIAQLQRLSFGKLSKTPVYSRLHAILIKQHIRKLWARR 475
           V  +N  F+++  K   +  LQR +  +LS T +Y R+H   I +   K   RR
Sbjct: 22  VRGDNKVFRFVNKKSESLF-LQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRR 74


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 636 VNNNNTQFQYLKSKMHFIAQLQRLSFGKLSKTPVYSRLHAILIKQHIRKLWARR 475
           V  +N  F+++  K   +  LQR +  +LS T +Y R+H   I +   K   RR
Sbjct: 22  VRGDNKVFRFVNKKSESLF-LQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRR 74


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 648 NATLVNNNNTQFQYLKSKMHFIAQLQRLSFGKLSKTPVYSRLHAILI 508
           N ++   NN++ QY+  K+  +A +  ++FGK   TP    L   ++
Sbjct: 40  NTSICKPNNSEEQYVILKLDKLALVTDITFGKF-HTPHLCNLKDFIV 85


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 453 LCRIIVSAYFASIDSYNLNTRYRMGIIVRCNKPYSFFTLC 334
           LC I+ +    ++ S +LNT+    IIV  +  YS F LC
Sbjct: 104 LCEILNAR---NVISCSLNTQKFFFIIVAASNVYSIFQLC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,677
Number of Sequences: 5004
Number of extensions: 57464
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)