Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00371
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    33   0.21 
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220...    32   0.48 
09_02_0112 - 4396756-4397406,4397514-4397717                           28   5.9  
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    28   7.7  

>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = -2

Query: 633 NNNNTQFQ--YLKSKMHFIAQLQRLSFGKLSK-TPVYSRLHAILIKQHIRKLW 484
           +NNNT+ Q  +   ++  ++Q++RL   KL + TP+YS    +  K+H++ L+
Sbjct: 563 SNNNTEIQDGWNLDELGSLSQMRRLDIIKLERATPLYSTTSLLTYKKHLKVLY 615


>08_02_1102 +
           24319569-24319917,24320120-24321496,24321819-24322001,
           24322147-24322460,24322515-24322631,24323057-24323313,
           24323504-24323684,24323802-24324074,24324535-24324729
          Length = 1081

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 253 CSNKGSTSTENFQEFLFQKRDYFNFDSAKSEETIRFVTSYDYAHPIPRV 399
           C+ K  TS+  FQ    Q  D F FD+     ++  V  YD+  P   V
Sbjct: 617 CNGKSKTSSIKFQTLEPQWNDIFEFDAMDDPPSVMNVHVYDFDGPFDEV 665


>09_02_0112 - 4396756-4397406,4397514-4397717
          Length = 284

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 466 ISFPTRPELPNMLLNQNCMQPAIHR 540
           ++ PTRPEL  ++L +   QP +HR
Sbjct: 78  LAAPTRPELKPLVLQRADAQPPVHR 102


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   LIIKTRNKHDLF*SDLRCGLSGFGCG 84
           LII  + +H +F  ++RC L G  CG
Sbjct: 297 LIIGEKKQHTIFKMEIRCVLLGVSCG 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,220
Number of Sequences: 37544
Number of extensions: 340075
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)