Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00371
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    32   0.42 
U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical p...    28   6.9  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    27   9.1  

>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 203 EDYLWIYVALNRKADVFAATKDLPRPKTFKNSYSRKE 313
           +DYLWIY   N K++++   KDL   +  +NSY RK+
Sbjct: 8   KDYLWIYNDGNCKSNMYEFHKDL--QEHIENSYKRKK 42


>U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical
           protein C56E10.1 protein.
          Length = 547

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -2

Query: 513 LIKQHIRKLWARRKAYLVSDLCRIIVS---AYFASIDSYNLNTRYRMGIIVRCNKPYSFF 343
           +IK+   K  A     L+S +CR + +   A FA  +  ++  RYR   +  CN   +FF
Sbjct: 4   VIKKQKGKANAHSSLLLLSIICRAMFALRFALFAETEPLDITMRYRPTTVPSCNGCKTFF 63


>Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical
           protein C25A1.2 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 400 KIIRVNGREICRDDNTTQVGNKISFPTRPELPNMLLNQNCMQPAIHRSF 546
           K+ R  G ++   D++ + G+  S P+ P  P  L N NC   A  +SF
Sbjct: 173 KVRRHMGLQVEDGDSSDEEGSPGSDPSPPIFPTALWNFNCAPRAPIKSF 221


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 429 YFASIDSYNLNTRYRMGIIVRCNKPYSFFTLC 334
           Y +  +  N    Y + I+ R NKP  +FT+C
Sbjct: 176 YISISEKLNETPEYSVPIVPRLNKPPHYFTVC 207


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 399 NTRYRMGIIVRCNKPYSFFTLCTIKIEIISFLE*EFLKVFGRGRSFVAANTSALRF 232
           +T  R G++V   + Y   T     + I SFL    L   G  ++F+   T  +RF
Sbjct: 249 STLQRSGVVVDNEEKYGLPTKLIALLTITSFLADTPLGCIGIAKAFIQQGTKLMRF 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,123,517
Number of Sequences: 27780
Number of extensions: 315270
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)