Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00371
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co...    29   3.7  
At5g22490.1 68418.m02625 condensation domain-containing protein ...    29   3.7  
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative...    29   3.7  
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    28   4.9  
At2g17270.1 68415.m01995 mitochondrial substrate carrier family ...    28   6.5  
At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing ...    27   8.5  

>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
           contains Pfam profile PF00535: glycosyl transferase,
           group 2 family protein
          Length = 668

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 319 FNFDSAKSEETIRFVTSYDYAH 384
           FN DS   EETI  V+++D+ H
Sbjct: 369 FNMDSKVDEETINVVSTFDWPH 390


>At5g22490.1 68418.m02625 condensation domain-containing protein
           contains Pfam profile PF00668: Condensation domain
          Length = 482

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 281 SVEVDPLLLQTHQLCDSMRRKSISSLQRFQEAALIRH 171
           SV VDP+++  H+LCD +     +      E  L  H
Sbjct: 444 SVAVDPMIIDAHKLCDELEESLKNMKLAILEKGLPNH 480


>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
           (UBP1) similar to GI:11993461
          Length = 1083

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 307 KRDYFNFDSAKSEETIRFVTSYDYAHPIPRVKIIRVNGREICRDDNTTQVG 459
           K+DYF+F S   E  IR    +    P+ + ++     +  C DD T   G
Sbjct: 556 KKDYFDFSSFLDEPEIREGPVF---RPLSKSEVYEAGFKADCSDDKTVSAG 603


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 433 RDDNTTQVGNKISFPTRPELPNMLLNQNCMQPAIHRSF*QFSKTQPLELRDKV 591
           R   ++ +GN + F  R     M  N++C++P +        K  PL L D++
Sbjct: 148 RPSRSSSIGNGVQFLNRHLSSVMFRNKDCLEPLLDFLRVHKYKGHPLMLNDRI 200


>At2g17270.1 68415.m01995 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 309

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 491 SSGRVGKLILFPTCVVLSSLHISRPLTLIILTRGIGW 381
           ++G VG +I  P  VVLSSL+ ++   ++   R IG+
Sbjct: 221 TAGAVGTIISNPADVVLSSLYNNKAKNVLQAVRNIGF 257


>At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2b
           GI:3386548 from [Arabidopsis thaliana]
          Length = 396

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 278 VEVDPLLLQTHQLCDSMRRKSISSLQRFQEAALIRHATDLVSMGISRK*NTQDTETS 108
           V  DP    +H L DS    S SSL         +  TD  S+ +S   N +  ETS
Sbjct: 49  VSHDPYSSSSHVLPDSSSSSSSSSLSLRPHMMNNQSVTDNTSLKLSSNLNNESKETS 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,092,589
Number of Sequences: 28952
Number of extensions: 286772
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)