Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00370X
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    60   2e-10
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   1.5  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.6  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    27   2.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    27   2.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   3.4  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    26   4.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.5  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    22   5.9  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    25   7.9  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +3

Query: 3   LEAEYXXXXXXXXXXXXXXXXXXXDNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFS 182
           LE EY                   D F ALL  L  + K+T  + W ELYP+I  D R+ 
Sbjct: 386 LEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRYL 445

Query: 183 AMLGQSGSTPLDLF 224
            +LGQSGSTPLDLF
Sbjct: 446 NLLGQSGSTPLDLF 459


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 302 FEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIE 481
           FE K     ++        S+ ASLD+   +    SLLE +E ++KE++    + +   E
Sbjct: 214 FEEKRAKRIKKQGASTASSSREASLDSTIKQPLSASLLESSEPKEKEEIVGSLEEEGTDE 273

Query: 482 SA 487
           SA
Sbjct: 274 SA 275


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 314 PETTFEEFATVVCEDSKSASLDAGNVKL-TYNSLLEKAETRKKEKLKEESKAQKKI 478
           PE   +EF+      S SA    GN+ +   NSL + A ++ KE   +E+ ++K+I
Sbjct: 233 PEKMGDEFSENSLSKSDSAVKQEGNLLIHPNNSLKDTAPSKCKEPPVDEALSKKEI 288


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 329 EEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQK 472
           E+FA +V E   SAS     +KL ++  + + E++K+E    E K  K
Sbjct: 37  EQFANLVVETKSSASAFPSALKLKHS--IVQVESQKEEAATIEEKCPK 82


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +2

Query: 308 VKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIESA 487
           VKPE+   ++ +       SA+L +GN  +  +      ++++  + KEE++        
Sbjct: 292 VKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQSQRDMRKKEEAEGAVWARRY 351

Query: 488 FKWALSD 508
           FKW   D
Sbjct: 352 FKWEEHD 358


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 353 EDSKSASLDAGNVKLTYNSLLEKAETRKKEK-LKEESKAQKKIESAFKWALSDQTSTT 523
           +++++ +  A    L Y+S +EK E R+ E+  K+  +A K+ +      L DQ   T
Sbjct: 287 KNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKENDEEAYLKLIDQAKDT 344


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +2

Query: 410 LLEKAETRKK-EKLKEESKAQKKIESAFKWALSDQT----STTCSRGARLRRN 553
           L E++E +++ ++ KE++K QK++E   K    +QT    S    RG  + RN
Sbjct: 79  LYERSEEKRRIQQEKEDAKVQKRLEIEKKQKDREQTRNMLSKKTKRGQPIMRN 131


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/71 (21%), Positives = 30/71 (42%)
 Frame = +2

Query: 305 EVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIES 484
           E+  +    E     CED      +  N       LLE A++  +E+L+   +A+  ++S
Sbjct: 290 EISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASLKS 349

Query: 485 AFKWALSDQTS 517
              +   + +S
Sbjct: 350 QINFLEKEVSS 360


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 314 PETTFEEFATVVCED 358
           PE++ EEFATV+C D
Sbjct: 278 PESSAEEFATVMCLD 292


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 21.8 bits (44), Expect(2) = 5.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 323 TFEEFATVVCEDSKSA 370
           TF E  +V C+D+KSA
Sbjct: 355 TFVEAYSVFCKDTKSA 370



 Score = 21.8 bits (44), Expect(2) = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 470 KKIESAFKWALSDQTSTTCSRGARLR 547
           K  +SA KWAL        ++GA LR
Sbjct: 365 KDTKSADKWALISVALDNIAKGAVLR 390


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 377 DAGNVKLTYNSLLEKAETRKKEKLKEESK 463
           +A   K  Y S  E+ + R+KEK++   K
Sbjct: 171 NAAKKKFRYESKFERTQDRRKEKIRRLKK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,241
Number of Sequences: 5004
Number of extensions: 22132
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)