Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00370X
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769...    33   0.12 
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    33   0.16 
09_03_0208 + 13500051-13500434,13501392-13501532,13501631-135019...    28   4.6  
08_01_0340 - 3008124-3009176                                           28   6.1  

>01_05_0199 -
           19174971-19175105,19176302-19176628,19176813-19176915,
           19178852-19178916,19179941-19180048,19180213-19180305,
           19180395-19180442,19180801-19180899,19180980-19181096,
           19181186-19181239,19181312-19181404,19181776-19181881,
           19182050-19182084,19182173-19182259,19182385-19182462,
           19182528-19182596,19182682-19182780,19183644-19183685,
           19184498-19184570,19184654-19184982,19185070-19185127,
           19185217-19185269,19186075-19186144,19186276-19186337,
           19186452-19186540,19186906-19187011,19187110-19187178,
           19187295-19187330
          Length = 900

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +3

Query: 75  DNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKAR 254
           D+FLA+L+   E  +LTS + W +   +   D RFSA+  +      DLF+ Y+  L+ +
Sbjct: 433 DDFLAMLE---ESKELTSSTRWSKAITMFEDDERFSAV--ERPREREDLFESYLMELQKK 487

Query: 255 STTK 266
           ++T+
Sbjct: 488 TSTQ 491



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  DNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQ-SGSTPLDLFKFYVENLK 248
           D F  +L+    EG LT+ + W +    +     + A+    SGS P DLF+  +E L+
Sbjct: 548 DEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELE 606



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 323 TFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQK 472
           T E+F T V ED     +   N+KL ++  +E+   R+KE +KE  K Q+
Sbjct: 632 TLEDFETAVTEDDTLKGITNINMKLIFDDQVER--LREKE-VKEAKKRQR 678


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 323 TFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQK 472
           T ++F T+  ED+K   L AG V +    +  + ET   EK +  SKA K
Sbjct: 409 TEDQFRTLRWEDTKWGGLKAGQVMMEPKPVFARIETETDEKDQSSSKATK 458


>09_03_0208 +
           13500051-13500434,13501392-13501532,13501631-13501996,
           13502450-13502692,13502951-13503043,13503459-13503659,
           13503809-13504021
          Length = 546

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 MSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVE 239
           MS+W  L P+ +A+M   A+  + G+  LDL    VE
Sbjct: 383 MSMWTRLQPLYAANMWNEALNKRLGTEGLDLHGIIVE 419


>08_01_0340 - 3008124-3009176
          Length = 350

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 119 IDIDVSMGRAVSGYFCRHEIFSYVRTKRIDTVRLIQ 226
           I+IDV +G ++      H  F YV+T  +D   LI+
Sbjct: 178 IEIDVDVGSSIVANAIVHLAFGYVQTLTVDLAFLIE 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,783,279
Number of Sequences: 37544
Number of extensions: 133132
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)